General information for g16830.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Exportin-4.
Parent gene
- The parent gene g16830 is located on chr_4: 11280900..11283614 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16830 | g16830.t1 | isoform | g16830.t1 | 11280900 | 11283614 |
| chr_4 | g16830 | g16830.t1 | exon | g16830.t1.exon1 | 11280900 | 11281113 |
| chr_4 | g16830 | g16830.t1 | cds | g16830.t1.CDS1 | 11280900 | 11281113 |
| chr_4 | g16830 | g16830.t1 | exon | g16830.t1.exon2 | 11281165 | 11281311 |
| chr_4 | g16830 | g16830.t1 | cds | g16830.t1.CDS2 | 11281165 | 11281311 |
| chr_4 | g16830 | g16830.t1 | exon | g16830.t1.exon3 | 11281367 | 11282548 |
| chr_4 | g16830 | g16830.t1 | cds | g16830.t1.CDS3 | 11281367 | 11282548 |
| chr_4 | g16830 | g16830.t1 | exon | g16830.t1.exon4 | 11282858 | 11283006 |
| chr_4 | g16830 | g16830.t1 | cds | g16830.t1.CDS4 | 11282858 | 11283006 |
| chr_4 | g16830 | g16830.t1 | exon | g16830.t1.exon5 | 11283123 | 11283614 |
| chr_4 | g16830 | g16830.t1 | cds | g16830.t1.CDS5 | 11283123 | 11283614 |
| chr_4 | g16830 | g16830.t1 | TSS | g16830.t1 | NA | NA |
| chr_4 | g16830 | g16830.t1 | TTS | g16830.t1 | NA | NA |
Sequences
>g16830.t1 Gene=g16830 Length=2184
ATGATTCTTTTTTCAATCCAGCTCTCATATGGTGACACAGTCTATACAGACGCTAGTAAA
TCCCTCCTTGAAGCATGGCTTGATGTAATTGATGTCGTTGAATTTGCCTTTTCCGAAGAA
GTTCATCATCATGCTCGAGTAATTTTTGATAAATTTATTGAATGTCACATTGATGGAAGT
GGAACAGATCAAGAAGTCAATGAAGTGAAAATGAAAAGTGAAAGAGAAGCCAATAAGGAG
CAATTGATTATTATAGGATTTTTAGGCAGATTAAATGTTCAACATTCTTTGACACAACTT
GCACTTTATACTGAAGCCAAACTCAATGAACTTTGCACTTGCATGGAAAATCCTGACAGT
GTAACAAAAATCTTCGACGCTCTTACTTGGCTCATTATGATATCTGGGCATGTTCTTTGT
ATGGATGCAATCGGAGAAAAACCTTTAATTCCACGTGACATTAATCAGCTGTCTGTCCAA
CTATCTCAAGAACATAAAATTGATTCTCAATCGACTCTCACAACACTTCAGTCTTCGGTT
CAACTTCAATTACCACAAGATAAATGCGATCCAACTGTTCGAATTTTTGCCAACATTTTG
AGACTTTGTGAAATGGAAAATCGTGCCATTGAAAGTGGTTTTGGTGCAACATGGTCACCA
TTGCTTTCAAGTACAATTATGTGGTTCATTGGCCAATATTTGAATATTTACATTCTCATT
GATGCAACTTATTATAATCCATTAGCGCCAGTTTTTGCTGAATTATTTACTATTGGTTCT
GCTCTACCTGCCAATGCATGGTGTATGAATTTCATACTTAATAAAGTTGCATGGAATATG
CACAAATATCATCATGATGTTGATGTTGTTGAAGAATCAATTCGACTATTTTTGGACATT
GTGAATGTTCGTAATCAAAAACTTCCACATGTTATTGAACTTGAAAGTTTTCAAAATTTA
ATTCATATGCGTGATTTGCAACTTGACTCGAAAATTAAAAGAAGCGTTTATAAAGGCTTG
ATTATGGCCACAGCTGCCTTCCAAAATGTCGATCAACGTCAAGAGTGTCTTAGACATTTA
CTTGAACCTATTGGAGCACGATTTGATTCAGTTTGTGCTGAAGCATCAAGATTGCATCAT
GAAACTCATGTTCGTGAGAAAGTGCTAGTTGTTTTAGATGAAATGACTGGTGTAGCACAA
GGAATTAATGGCAGCACTTTTCCATTTGTTTATCAAACCATGCGAGAACGTTTTCATCGA
TTACCTGACATTATGCTGCTATTCAGAAATTATTTAGACATAAATGTTGCTGTAATGAAA
GTTTTGATAGAAATGACGACAATTCAAGTTGCTACAAGTGGAGCAGTTGATTTATCAAGA
GATTTCTATGAAGTCTGCTTTAGAGCCATGCGATGCTACATGGAACAACAGGGACAAAGA
ATTGAAAAAATTTATGGTGATGATGAAGAACAGCCTGATGATGTTTTGATATTTGTAGAA
TTATTTAAAAAACTTACAATTCAATACGTCTTTGAACAAGCTGAACATTCTGTAGTTGCA
AATTTAGGAATAACAATACTTTCAAATCTCATGCCGAAAATGTATCCATTACTTGAAAGA
TTCCCAGATATTGCAATGGCATATTATAAAAGTCTCAATTGTTTCATTGAATTGCTCGTT
TGTAATAATGAGCTTCATCAACTTCCTGCTGAAATTCTCAATCATATTTTATACACAATA
AAAATTGGACTGACATCATTTACATATCCAGAAATTCAAGGACATTCACTTGATCTTCTT
ATAACTTTTGGTGATTCACTAATTCAAGACACAGAAAATCGTTTGCAGCATTTACGTGAA
TTGACAGTGGAGCCTTTTGGAAAATTACTTTTTGATGTGATTGTCGGCTTGAATTTGCAT
AGTGAAAATAAAAATGACTGTTATGGAGCAATTTATTTGCTGGCTTGCGCATCAAGAACT
GAAATTAATTTTTGTCATGAGACTGTGACAGCTTTAGTAAATAAGCAAAAGGAAAGAGTG
ACTTATGCAACTGATAGTGACACACCGGAAGTTGAAAAATTAAAGAATTTTGTTTTTAGT
CATTCAAGAGAGCAAAAAATGAGTTTTATTGATTTGTTAGATAAATTCGTATCTAGCATT
TGCTTCCTTTATCATCAAGTTTAA
>g16830.t1 Gene=g16830 Length=727
MILFSIQLSYGDTVYTDASKSLLEAWLDVIDVVEFAFSEEVHHHARVIFDKFIECHIDGS
GTDQEVNEVKMKSEREANKEQLIIIGFLGRLNVQHSLTQLALYTEAKLNELCTCMENPDS
VTKIFDALTWLIMISGHVLCMDAIGEKPLIPRDINQLSVQLSQEHKIDSQSTLTTLQSSV
QLQLPQDKCDPTVRIFANILRLCEMENRAIESGFGATWSPLLSSTIMWFIGQYLNIYILI
DATYYNPLAPVFAELFTIGSALPANAWCMNFILNKVAWNMHKYHHDVDVVEESIRLFLDI
VNVRNQKLPHVIELESFQNLIHMRDLQLDSKIKRSVYKGLIMATAAFQNVDQRQECLRHL
LEPIGARFDSVCAEASRLHHETHVREKVLVVLDEMTGVAQGINGSTFPFVYQTMRERFHR
LPDIMLLFRNYLDINVAVMKVLIEMTTIQVATSGAVDLSRDFYEVCFRAMRCYMEQQGQR
IEKIYGDDEEQPDDVLIFVELFKKLTIQYVFEQAEHSVVANLGITILSNLMPKMYPLLER
FPDIAMAYYKSLNCFIELLVCNNELHQLPAEILNHILYTIKIGLTSFTYPEIQGHSLDLL
ITFGDSLIQDTENRLQHLRELTVEPFGKLLFDVIVGLNLHSENKNDCYGAIYLLACASRT
EINFCHETVTALVNKQKERVTYATDSDTPEVEKLKNFVFSHSREQKMSFIDLLDKFVSSI
CFLYHQV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g16830.t1 | PANTHER | PTHR12596:SF1 | EXPORTIN-4 | 18 | 710 | 0 |
| g16830.t1 | PANTHER | PTHR12596 | EXPORTIN 4,7-RELATED | 18 | 710 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0051169 | nuclear transport | BP |
| GO:0005049 | nuclear export signal receptor activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
