Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Bis(5’-nucleosyl)-tetraphosphatase [asymmetrical].

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g16843 g16843.t3 TTS g16843.t3 11366720 11366720
chr_4 g16843 g16843.t3 isoform g16843.t3 11366750 11367875
chr_4 g16843 g16843.t3 exon g16843.t3.exon1 11366750 11367064
chr_4 g16843 g16843.t3 cds g16843.t3.CDS1 11366750 11367064
chr_4 g16843 g16843.t3 exon g16843.t3.exon2 11367239 11367425
chr_4 g16843 g16843.t3 cds g16843.t3.CDS2 11367239 11367355
chr_4 g16843 g16843.t3 TSS g16843.t3 11367443 11367443
chr_4 g16843 g16843.t3 exon g16843.t3.exon3 11367516 11367875

Sequences

>g16843.t3 Gene=g16843 Length=862
TTTTAAATAAATTTTTATTATTTTATAAATTCACAAATGACTTTTCATGCTTTTTTTTAA
GATTGTTTTTGTAAATAAAAAAAAAGATTGATGGGCAAAAATTTTTAGAGGGAAATTTAA
ATGATTTTTGGCAGTTGAAAAAGTGTTTTGAGATTTTTAAATTTATTAAAAATTTTAAGA
GAAATTGTTGAATAAATTAAGAATTAGATTTTGGCACTTTTATTCATACTTGACTCTTAA
CTTGACTCAATCCATGCAAGTTGACTTACAAAAATTTATAGCTAAAAATCTCAGATAAGC
GCAAAAAAGCATAAATAAAGCGATACATGAATAAACCTGAAAATAAAGTTCATTCAACAG
GTAAACAAATCAACTTTAAAAATTTACATAAATTTAAAGCATAGAAAACAAAGAACTTTG
TGTACAAAAAATGACAGCAAAAAGAGCAACAGGATTTTTAATTTATCGTTTGATATCAAA
TGAAATTCAATATTTATTAATGAAAGCTAGTTATGGAAATTTTCATTGGACACCACCAAA
GGGTCATGTTGATCCAGGTGAATCAGATTATGAAACAGCACTTCGTGAAACTCATGAAGA
AGCAGGCTATAATGAAGATGATTTGATAATTTACAAAGATTTAAATAAAACTCTAAATTA
TCAAGTTAAAGGAAAACCAAAAGTTGTGATCTACTGGCTTGCTCAATTAAAAAATCCTCA
GCATATGCCGACACTTTCTGATGAACATACAGAATTTAAATTCTTGAATAAAAACGATGC
AATTAAAATTTCTGGTTACAAAGATTTTGCTGAAATGGTTGAATATTTTGATAAAGAAAT
AAGAAAAATTCATGGAATTTAA

>g16843.t3 Gene=g16843 Length=143
MTAKRATGFLIYRLISNEIQYLLMKASYGNFHWTPPKGHVDPGESDYETALRETHEEAGY
NEDDLIIYKDLNKTLNYQVKGKPKVVIYWLAQLKNPQHMPTLSDEHTEFKFLNKNDAIKI
SGYKDFAEMVEYFDKEIRKIHGI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g16843.t3 CDD cd03428 Ap4A_hydrolase_human_like 3 135 6.04648E-55
9 g16843.t3 Gene3D G3DSA:3.90.79.10 Nucleoside Triphosphate Pyrophosphohydrolase 2 139 2.1E-33
2 g16843.t3 PANTHER PTHR21340:SF0 BIS(5’-NUCLEOSYL)-TETRAPHOSPHATASE [ASYMMETRICAL] 4 137 9.7E-34
3 g16843.t3 PANTHER PTHR21340 DIADENOSINE 5,5-P1,P4-TETRAPHOSPHATE PYROPHOSPHOHYDROLASE MUTT 4 137 9.7E-34
4 g16843.t3 PRINTS PR01405 Bis(5’-nucleosyl)-tetraphosphatase signature 19 37 5.5E-14
6 g16843.t3 PRINTS PR01405 Bis(5’-nucleosyl)-tetraphosphatase signature 64 85 5.5E-14
7 g16843.t3 PRINTS PR01405 Bis(5’-nucleosyl)-tetraphosphatase signature 85 103 5.5E-14
5 g16843.t3 PRINTS PR01405 Bis(5’-nucleosyl)-tetraphosphatase signature 105 123 5.5E-14
1 g16843.t3 Pfam PF00293 NUDIX domain 6 131 4.6E-17
11 g16843.t3 ProSitePatterns PS00893 Nudix box signature. 38 59 -
12 g16843.t3 ProSiteProfiles PS51462 Nudix hydrolase domain profile. 2 137 14.024
8 g16843.t3 SUPERFAMILY SSF55811 Nudix 5 137 1.34E-23

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016787 hydrolase activity MF
GO:0008796 bis(5’-nucleosyl)-tetraphosphatase activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values