General information for g16858.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Plexin-A4.
Parent gene
- The parent gene g16858 is located on chr_4: 11421199..11441890 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16858 | g16858.t1 | isoform | g16858.t1 | 11421199 | 11441890 |
| chr_4 | g16858 | g16858.t1 | exon | g16858.t1.exon1 | 11421199 | 11421369 |
| chr_4 | g16858 | g16858.t1 | cds | g16858.t1.CDS1 | 11421199 | 11421369 |
| chr_4 | g16858 | g16858.t1 | exon | g16858.t1.exon2 | 11434691 | 11434802 |
| chr_4 | g16858 | g16858.t1 | cds | g16858.t1.CDS2 | 11434691 | 11434802 |
| chr_4 | g16858 | g16858.t1 | exon | g16858.t1.exon3 | 11434862 | 11435770 |
| chr_4 | g16858 | g16858.t1 | cds | g16858.t1.CDS3 | 11434862 | 11435770 |
| chr_4 | g16858 | g16858.t1 | exon | g16858.t1.exon4 | 11436300 | 11436644 |
| chr_4 | g16858 | g16858.t1 | cds | g16858.t1.CDS4 | 11436300 | 11436644 |
| chr_4 | g16858 | g16858.t1 | exon | g16858.t1.exon5 | 11436705 | 11437007 |
| chr_4 | g16858 | g16858.t1 | cds | g16858.t1.CDS5 | 11436705 | 11437007 |
| chr_4 | g16858 | g16858.t1 | exon | g16858.t1.exon6 | 11437198 | 11437750 |
| chr_4 | g16858 | g16858.t1 | cds | g16858.t1.CDS6 | 11437198 | 11437750 |
| chr_4 | g16858 | g16858.t1 | exon | g16858.t1.exon7 | 11437811 | 11439706 |
| chr_4 | g16858 | g16858.t1 | cds | g16858.t1.CDS7 | 11437811 | 11439706 |
| chr_4 | g16858 | g16858.t1 | exon | g16858.t1.exon8 | 11439760 | 11440240 |
| chr_4 | g16858 | g16858.t1 | cds | g16858.t1.CDS8 | 11439760 | 11440240 |
| chr_4 | g16858 | g16858.t1 | exon | g16858.t1.exon9 | 11440447 | 11440930 |
| chr_4 | g16858 | g16858.t1 | cds | g16858.t1.CDS9 | 11440447 | 11440930 |
| chr_4 | g16858 | g16858.t1 | exon | g16858.t1.exon10 | 11440991 | 11441171 |
| chr_4 | g16858 | g16858.t1 | cds | g16858.t1.CDS10 | 11440991 | 11441171 |
| chr_4 | g16858 | g16858.t1 | exon | g16858.t1.exon11 | 11441236 | 11441366 |
| chr_4 | g16858 | g16858.t1 | cds | g16858.t1.CDS11 | 11441236 | 11441366 |
| chr_4 | g16858 | g16858.t1 | exon | g16858.t1.exon12 | 11441512 | 11441657 |
| chr_4 | g16858 | g16858.t1 | cds | g16858.t1.CDS12 | 11441512 | 11441657 |
| chr_4 | g16858 | g16858.t1 | exon | g16858.t1.exon13 | 11441723 | 11441890 |
| chr_4 | g16858 | g16858.t1 | cds | g16858.t1.CDS13 | 11441723 | 11441890 |
| chr_4 | g16858 | g16858.t1 | TSS | g16858.t1 | NA | NA |
| chr_4 | g16858 | g16858.t1 | TTS | g16858.t1 | NA | NA |
Sequences
>g16858.t1 Gene=g16858 Length=5880
ATGTCAGCAATGACGTTAGTGCACATTGTGCTATTAGTGTTGGGTTTGAGTGTAGTGAAT
AGCAAAAGCAACAGTCAATCAAATGGCAATAATACAAGAGGTATCATCAGGCATCAGCAG
ACATTTGAAACAAAACTCAATCATTTAGTGGTTGACAATATTGGAAGTCGGATTTATGTT
GGTGCAGTAAATAATTTATATCAACTCACACCAGATTTAGAAATAAAAATACGTGAAAAA
ACAGGACCAAAGCCAGATTCACCAGAATGTGCACCAATTGAATGTCCATCAAATGTAAAT
CGAAAACTCACTGATAATGTAAACAAAGTTCTTCTAATTGACTACACATCATCACATGTG
ATAGCATGCGGAACACTTTCTCAAGGAATTTGTGTCGTGCGATCACTACAAAATATTTCA
AATATTGAACAAGAAGTGCTGGAAGCAATTGTAGCAAATAATGAAGAAGCTTCAACTGTG
GCTTTTATTGCACCAGGTCCACCAGCACCACCGTCGACAATCGTCATGTATGTTGGTGTC
ACTTACATCAATAATTCACCATATCGCGGTGAAATTCCAGCCGTTGCAAGTCGAAGTTTA
CAAAAAGAACGAATGTTTCAAATTGCCGTTTCTCATGTCACAACTGGCACAAGAACATTC
ATTAATCCACTACTTCGAGAATCATATCCAGTCAAATATGTTTATGGCTTCTCATCAGAG
CGCTTTTCTTATTTTCTAACATTCCAATTGAAGCATACACATGGACAAAGCAACGAATAT
ATCAGTAAACTAGTGAGGTTATGTCAAGAGGATAGCAATTATTATTCCTATACTGAAATT
CCCATTGAATGCATCAGTGAAGATGGAACAAAATACAATAGCATACAAGCAGCTTATCTC
GGTCGTCCAGGACAGGATTTAGCCGAAAGTCTCAATGTGCAGACTAGTGATGATGTTTTA
TACGCAATTTTTAGTCATGCCAAAGGAAATATTACAACAAATAGAACAGCAATGTGCATT
TATTCACTAAAATCTATAAGAAGAAAATTCATGCAAAATATCAAAGCATGCTTCAATGGC
GATGGTTCAAGAGGTCTTGATTTTATTTCACCAAATATGAAATGTGTGCCAACAAGATTG
CAATCATTGAGTGAAGATTTTTGTGGTTTGGATGTTAATTCACCTTTGGGAGGTGAAATG
CCAGTAACGGCAGCAACAGCAGCAACTTTTACAACAGAAATAACATCAATTGCATCAACA
ACAACAAGTAGTTTTACAGTAGTTTTTATTGGAACTGCAAATGGTCATTTAAAGAAACTT
ACAGTTGAAAGTTCAAATTCAGCAACTGAATATGCTGACATTACAATTGATGAAGGTTCA
CGCATCAATGCTGACATGTTTTTTGATAAAAAAGAAATGAATATTTATGTCATGAGCGAG
CGTAAGCTGAGTAAGGTGCGAGTTCATGAGTGTGGCATTCATAAGACATGTGGCGAGTGT
CTTGGCTCGAGAGATCCCTACTGTGGCTTTTGCAATTTGGAAAACAAGTGTACTCTAAGG
ACCAATTGTGAAGATGATGGTAATGATCCATTATCATGGGTCAATTATAAAAATGGCAAA
TGTACATCTATAACTTCAGTTGTTCCACATCAATTACAGCGTACAACAGCAAGAAATCTT
GAGCTTGTTATTGACCATTTACCGAATTTAAAAGAACATCTTGTTTGTGCTTTTTCAACT
AAAGAAAAAACAATTGTGACAAATGCGACAAGAAATGGAAATATTGTCAATTGCACAACA
CCAAGGACTGATTTGTTGCCTCAAATTGAACCTGGAAAACATCACTTCACAGCACGTCTT
AGCGTTAAGACAGCAAGCGGTCCCGACCTCGTCTTTACTAACTTCACATTCTTTGACTGT
TCGACACATCTTTCATGCACACGCTGTGTGTCATCACTCTTTCCATGTGATTGGTGTGTG
GACACTCATCGTTGCACGCATGACACGGCTGAGAATTGTCGCAATGACATCATGGTGAAT
GGCGTCAACCGCATGGGTCCATCTTATCGTTCAGGACCAGCATTTTGTCCCGCCATCAAT
GTCACCGATCTAGGTACAGAAATTTTAGTGCCAGCAGGCGTTAAACGTTCTGTAAAAGTA
CGCGTTCATGTCATTGGTCATTCTATCGTTCAAACACGTTACGTGTGTCAATTTAATATT
GAGGGTCGTGTATCAAGTGTCAATGCACAACTGCTAGGTGATACTATTTATTGCGATTCC
ATGGAGTTTATGTATACATCGAAACCTGCACATATCACAGCACCATTTGCTGTTATTTGG
GATGGAAGTAAACCATTAGATAATCCACACAATATTCATGTCATTATTTATAGATGTCGT
GATATGGCAGACAGTTGTGGAATGTGTTTAGCACTTCCAGCAAAATATGGTTGCGGTTGG
TGTTCATCATCAAATACATGTGAAGTAGAAGAACAATGTAAAGGAACAGAAGGAACAGTT
GATTGGTTAAATCGTTTACAAACTTGTCCAAATCCAGAAATTCACAATTTCAGTCCTAAA
ACAGGACCATGGGAGGGTGGCACAAATATCACCATTACTGGCATAAATCTTGGCAAGAAT
TTTAGTGACATTTATTCAGGAGTCAAAATTGCTGGCATTGATTGTCTTCCATATCGTGAG
CTTTATTTAGACACAAGACAAATTGTATGTCGTGTTGAAGGACCAGGAACGATGGCCTAT
CGTGCTGGAAAAATTGTCGTTCAAGTTCAAGATTTTCGTGGTGAATCACGTGGTGATTTT
GAATTTGTCGATCCAATAATTCATGATTTTGAACCTAAATCGGGACCAATGAGTGGTGGC
ACAAGAATTCACATAAGAGGAAATCATTTAAATGCTGGCAGTTTGATTAGAGCTTCCATT
AATGGACTACGTTGTGAAATTATTTCAACTGATATTAAAGATGCTTTTTGTCGTACTTCA
GCATCACAACAGCATACACGAGGATTCTTAAAAATGGAATTTGATTCTGGTGAAAGACAG
TTAAATAGTGTGCAGTTTGAATATGTCAATGATCCAATTATTTCAATGGCAACAAGTGGA
ATTAATAATGAATTATTTCCTAAAGGTATTCCATCTGGTGGAATTAAAATAACAGTTGTT
GGCAAAAATTTCAAGTCAATTCAAACACCAAGCATGTACGTTTATTATCGTGATCGAATG
TTTATTTCACCATGTGTCATAATTAGTGATGCTGAAATGCATTGTGATTCACCAGTTATT
GATATGGATGTTCCATCACTTTTGAATGGTGATAGTCCACAAACATTACAATTAAGTGAT
GGTCGAAGATACAAGAGAAGTTTTGGTTCACCATATACACTTCGATTGAGTGATTTTAGT
CCACTTTCTGATTCTTATGCATTGGCATTAAGTGCTGAACCTTTAACTGGTGATGCATTA
AACAAATGGATGACTGGTGATCATCCTTTACATCTTGAATATGGTTTTCAAATGGATGAC
GTTATTGCAACTCAAAATCTTAGCAAAATCATGCAACCATTCCAACTTTATCCTGATCCA
ATTTATTATAAATTTAATGAGAAAAAATATTACAATAGCGAATATTTGACAATTAACGGA
AAAAATTTGGATCGTGCATGTAAAGAAAGTGATGTGACTGTAACAATTGGAAGTCAAATT
TGTAATATCACTTCATTATCGAGACAACAATTGACATGCAAACCACCACCTGATGGAATT
GATGATTTGCCAGTTGTTGTTAAAATTGGACAAACTTTAGAATTTGATATTGGAATTCTA
AGTTATACTCAACCTAATTTCTTATCAAGTTTGGGCAAGCACACATTAATTATGATTACA
ATTGCTATTTTTATTGTGATTGTCTTCATTATTGGTTTGCTCATTGCTTATAAGAAAAAA
ACAAGTGAATCAAATCGTGTGCTCAAAAATATGCAAGAACAAATGGATATTCTTGAATTA
CGTGTAGCAGCTGAATGTAAAGAAGCATTTGCAGAATTACAGACTGAAATGACAGATTTG
ACTGGTGATTTGACATCTGGTGGTATTCCATTCTTAAATTATCAGAAATATGCAATGAAC
ATTTTATTCCCAAATGTTCAAGACCATGACAGACTTTTACAGGAAAGAATTGAATTGGCA
AGAAAAGAAAAAGGTTTGCGGCTATTTGGGCAGCTTATTATGAACAAAACTTTTTTGCTG
CTTTTTATTAGAACTTTGGAAAGCAATCGCTATTTTTCAATGCGTGAAAGAGTAAATGTT
GCTTCTCTCATCATGATTACACTTCAATCAAAACTCGAATATTGCACGGACATTCTCAAA
ACACTTTTGGCTGAATTAATTGAAAAATGTATTGATGGCAAATCTCATCCAAAGCTTTTA
TTACGTCGAACAGAATCAGTTGCTGAAAAAATGCTTAGTGCATGGTTTACATTCCTACTT
CATAAATTCCTAAAAGAATGTGCTGGTGAGCCACTTTATATGCTCTTCCAAGCACTTAAA
TCACAAGTTGATAAAGGACCAGTTGATGCTGTCACACATGAAGCAAGATATTCATTGAGT
GAAGAAAAACTCATTCGACAATTGATTGAGTACAAATCAATGACTATTTTTGCATCTATC
GCACAACCACCAATTTTCTGCAATCAACTTGATAATATGACTAGTGAAAATGTACCAGTT
AAAGTTTTGGATTGTGACACAATTTCACAGGTCAAAGAAAAAATTCTCGACACAATCTAT
CGACCATGCTCTTATAGTCAACGACCAAAACGTGATGAAGTTGATTTAGAATGGCGAACT
GGCTCAAGTGGCCGTGTAATTTTATATGATGAAGATTCAACATCAAAGAATGACAATGAA
TGGAAGAAGCTCAATACATTGCATCATTATCGTGTACCAGATGGTGCATTCCTTACACTT
GTTAGTAAACAGCAGTCCAGCAATTATAATCTGTCCATTTTGAGTGAGAAAAATGAAAAA
TCAGCATACAAGTATGAAACTCTTAATTCCTCAAAGTACAATTCAACATCGCCACCATTT
AGTCGTGCTGGGTCACCACTCAATTATGATTCAGGCGAAAATGGTGTCAAATATTGGCAT
TTAGTAAAACATCATGATTCAGAACAAAAAGAAGGAGAAAGAGCTGATAAACTTGTTAGT
GAAATTTATCTCACTCGTTTGTTAGCTACAAAAGGCGCTGTCCAAAAGTTTGTTGATGAT
CTGATTGAAACAATCTTCAGTACGGCACATCGCGGTTCAGCACTGCCACTCGCAATTAAA
TATATCTTTGATTTTCTTGATGATCAAGCCATGTTGCATGGCATAACTGATCCACAAGTT
GTACATACATGGAAATCAAATTCACTACCATTAAGATTCTGGGTGAATTTGATAAAAAAT
CCGAATTTTGTGTTTGATGTACATAAATCAAATATTGTGGATTCATGTCTATCAGTGGTT
GCACAGACCTTTATGGACTCATGTTCCACATCTGATCATCGATTAGGTAAAGACTCACCA
AGCTCAAAGCTTCTCTACGCCAAAGATATTCCATGTTACCGCGAGTGGGTGGAGCGATAT
TATTGTGATATACGTGATATGCCAGCCATTTCTGATCAAGATATGAATGCCATGCTCAAT
GAGGAATCTAGACTTCATACAAATGAATTTAATACAAATAATGCACTACATGAGCTGTAC
TTGTATGCAGTAAAGTACAATGAGCAATTGTCAGTGACGCTCTTTGAAGATGAATTTTCC
AAAAAACAGCGTCTGCCGTCGAAACTTAGTCAAATTCACAGTATCATGTCATGCGAATAG
>g16858.t1 Gene=g16858 Length=1959
MSAMTLVHIVLLVLGLSVVNSKSNSQSNGNNTRGIIRHQQTFETKLNHLVVDNIGSRIYV
GAVNNLYQLTPDLEIKIREKTGPKPDSPECAPIECPSNVNRKLTDNVNKVLLIDYTSSHV
IACGTLSQGICVVRSLQNISNIEQEVLEAIVANNEEASTVAFIAPGPPAPPSTIVMYVGV
TYINNSPYRGEIPAVASRSLQKERMFQIAVSHVTTGTRTFINPLLRESYPVKYVYGFSSE
RFSYFLTFQLKHTHGQSNEYISKLVRLCQEDSNYYSYTEIPIECISEDGTKYNSIQAAYL
GRPGQDLAESLNVQTSDDVLYAIFSHAKGNITTNRTAMCIYSLKSIRRKFMQNIKACFNG
DGSRGLDFISPNMKCVPTRLQSLSEDFCGLDVNSPLGGEMPVTAATAATFTTEITSIAST
TTSSFTVVFIGTANGHLKKLTVESSNSATEYADITIDEGSRINADMFFDKKEMNIYVMSE
RKLSKVRVHECGIHKTCGECLGSRDPYCGFCNLENKCTLRTNCEDDGNDPLSWVNYKNGK
CTSITSVVPHQLQRTTARNLELVIDHLPNLKEHLVCAFSTKEKTIVTNATRNGNIVNCTT
PRTDLLPQIEPGKHHFTARLSVKTASGPDLVFTNFTFFDCSTHLSCTRCVSSLFPCDWCV
DTHRCTHDTAENCRNDIMVNGVNRMGPSYRSGPAFCPAINVTDLGTEILVPAGVKRSVKV
RVHVIGHSIVQTRYVCQFNIEGRVSSVNAQLLGDTIYCDSMEFMYTSKPAHITAPFAVIW
DGSKPLDNPHNIHVIIYRCRDMADSCGMCLALPAKYGCGWCSSSNTCEVEEQCKGTEGTV
DWLNRLQTCPNPEIHNFSPKTGPWEGGTNITITGINLGKNFSDIYSGVKIAGIDCLPYRE
LYLDTRQIVCRVEGPGTMAYRAGKIVVQVQDFRGESRGDFEFVDPIIHDFEPKSGPMSGG
TRIHIRGNHLNAGSLIRASINGLRCEIISTDIKDAFCRTSASQQHTRGFLKMEFDSGERQ
LNSVQFEYVNDPIISMATSGINNELFPKGIPSGGIKITVVGKNFKSIQTPSMYVYYRDRM
FISPCVIISDAEMHCDSPVIDMDVPSLLNGDSPQTLQLSDGRRYKRSFGSPYTLRLSDFS
PLSDSYALALSAEPLTGDALNKWMTGDHPLHLEYGFQMDDVIATQNLSKIMQPFQLYPDP
IYYKFNEKKYYNSEYLTINGKNLDRACKESDVTVTIGSQICNITSLSRQQLTCKPPPDGI
DDLPVVVKIGQTLEFDIGILSYTQPNFLSSLGKHTLIMITIAIFIVIVFIIGLLIAYKKK
TSESNRVLKNMQEQMDILELRVAAECKEAFAELQTEMTDLTGDLTSGGIPFLNYQKYAMN
ILFPNVQDHDRLLQERIELARKEKGLRLFGQLIMNKTFLLLFIRTLESNRYFSMRERVNV
ASLIMITLQSKLEYCTDILKTLLAELIEKCIDGKSHPKLLLRRTESVAEKMLSAWFTFLL
HKFLKECAGEPLYMLFQALKSQVDKGPVDAVTHEARYSLSEEKLIRQLIEYKSMTIFASI
AQPPIFCNQLDNMTSENVPVKVLDCDTISQVKEKILDTIYRPCSYSQRPKRDEVDLEWRT
GSSGRVILYDEDSTSKNDNEWKKLNTLHHYRVPDGAFLTLVSKQQSSNYNLSILSEKNEK
SAYKYETLNSSKYNSTSPPFSRAGSPLNYDSGENGVKYWHLVKHHDSEQKEGERADKLVS
EIYLTRLLATKGAVQKFVDDLIETIFSTAHRGSALPLAIKYIFDFLDDQAMLHGITDPQV
VHTWKSNSLPLRFWVNLIKNPNFVFDVHKSNIVDSCLSVVAQTFMDSCSTSDHRLGKDSP
SSKLLYAKDIPCYREWVERYYCDIRDMPAISDQDMNAMLNEESRLHTNEFNTNNALHELY
LYAVKYNEQLSVTLFEDEFSKKQRLPSKLSQIHSIMSCE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 43 | g16858.t1 | CDD | cd11236 | Sema_plexin_like | 46 | 489 | 9.78385E-143 |
| 44 | g16858.t1 | CDD | cd01180 | IPT_plexin_repeat1 | 852 | 944 | 1.78177E-27 |
| 45 | g16858.t1 | CDD | cd12790 | RasGAP_plexin_A | 1368 | 1954 | 0.0 |
| 33 | g16858.t1 | Coils | Coil | Coil | 1328 | 1348 | - |
| 25 | g16858.t1 | Gene3D | G3DSA:2.130.10.10 | - | 35 | 489 | 1.8E-126 |
| 27 | g16858.t1 | Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 502 | 641 | 1.4E-32 |
| 30 | g16858.t1 | Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 654 | 800 | 2.3E-11 |
| 29 | g16858.t1 | Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 812 | 944 | 4.8E-29 |
| 26 | g16858.t1 | Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 945 | 1037 | 2.7E-14 |
| 28 | g16858.t1 | Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 1185 | 1276 | 9.8E-8 |
| 32 | g16858.t1 | Gene3D | G3DSA:1.10.506.10 | - | 1321 | 1570 | 6.0E-102 |
| 24 | g16858.t1 | Gene3D | G3DSA:3.10.20.90 | - | 1571 | 1694 | 1.2E-42 |
| 31 | g16858.t1 | Gene3D | G3DSA:1.10.506.10 | - | 1713 | 1959 | 1.2E-107 |
| 11 | g16858.t1 | PANTHER | PTHR22625:SF65 | PLEXIN A, ISOFORM A | 19 | 1114 | 0.0 |
| 13 | g16858.t1 | PANTHER | PTHR22625 | PLEXIN | 19 | 1114 | 0.0 |
| 10 | g16858.t1 | PANTHER | PTHR22625:SF65 | PLEXIN A, ISOFORM A | 1165 | 1959 | 0.0 |
| 12 | g16858.t1 | PANTHER | PTHR22625 | PLEXIN | 1165 | 1959 | 0.0 |
| 1 | g16858.t1 | Pfam | PF01403 | Sema domain | 48 | 468 | 8.3E-54 |
| 8 | g16858.t1 | Pfam | PF01437 | Plexin repeat | 491 | 536 | 2.5E-6 |
| 9 | g16858.t1 | Pfam | PF17960 | TIG domain | 549 | 638 | 1.5E-19 |
| 7 | g16858.t1 | Pfam | PF01437 | Plexin repeat | 639 | 673 | 5.1E-6 |
| 2 | g16858.t1 | Pfam | PF18020 | TIG domain found in plexin | 706 | 797 | 3.8E-22 |
| 5 | g16858.t1 | Pfam | PF01833 | IPT/TIG domain | 852 | 913 | 4.3E-6 |
| 4 | g16858.t1 | Pfam | PF01833 | IPT/TIG domain | 945 | 1028 | 1.2E-6 |
| 3 | g16858.t1 | Pfam | PF01833 | IPT/TIG domain | 1211 | 1271 | 2.4E-7 |
| 6 | g16858.t1 | Pfam | PF08337 | Plexin cytoplasmic RasGAP domain | 1368 | 1930 | 8.6E-242 |
| 37 | g16858.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 21 | - |
| 38 | g16858.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 4 | - |
| 39 | g16858.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 5 | 16 | - |
| 42 | g16858.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 17 | 21 | - |
| 36 | g16858.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 22 | 1295 | - |
| 41 | g16858.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1296 | 1317 | - |
| 34 | g16858.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1318 | 1405 | - |
| 40 | g16858.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1406 | 1426 | - |
| 35 | g16858.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1427 | 1959 | - |
| 56 | g16858.t1 | ProSiteProfiles | PS51004 | Sema domain profile. | 17 | 488 | 51.397 |
| 48 | g16858.t1 | SMART | SM00630 | sema | 46 | 472 | 1.6E-89 |
| 53 | g16858.t1 | SMART | SM00423 | psinew7 | 490 | 542 | 9.2E-10 |
| 55 | g16858.t1 | SMART | SM00423 | psinew7 | 639 | 674 | 0.024 |
| 54 | g16858.t1 | SMART | SM00423 | psinew7 | 798 | 850 | 9.4E-6 |
| 52 | g16858.t1 | SMART | SM00429 | iptmega2 | 851 | 943 | 3.2E-13 |
| 49 | g16858.t1 | SMART | SM00429 | iptmega2 | 944 | 1029 | 1.2E-13 |
| 51 | g16858.t1 | SMART | SM00429 | iptmega2 | 1031 | 1135 | 4.2E-4 |
| 50 | g16858.t1 | SMART | SM00429 | iptmega2 | 1199 | 1283 | 0.3 |
| 21 | g16858.t1 | SUPERFAMILY | SSF101912 | Sema domain | 41 | 488 | 3.53E-121 |
| 14 | g16858.t1 | SUPERFAMILY | SSF103575 | Plexin repeat | 491 | 541 | 2.75E-10 |
| 15 | g16858.t1 | SUPERFAMILY | SSF103575 | Plexin repeat | 804 | 843 | 1.31E-5 |
| 20 | g16858.t1 | SUPERFAMILY | SSF81296 | E set domains | 848 | 945 | 1.2E-14 |
| 18 | g16858.t1 | SUPERFAMILY | SSF81296 | E set domains | 942 | 1031 | 1.26E-11 |
| 19 | g16858.t1 | SUPERFAMILY | SSF81296 | E set domains | 1045 | 1104 | 2.42E-7 |
| 17 | g16858.t1 | SUPERFAMILY | SSF81296 | E set domains | 1198 | 1271 | 3.22E-7 |
| 16 | g16858.t1 | SUPERFAMILY | SSF48350 | GTPase activation domain, GAP | 1405 | 1900 | 4.71E-43 |
| 23 | g16858.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 21 | - |
| 22 | g16858.t1 | SignalP_GRAM_POSITIVE | SignalP-TM | SignalP-TM | 1 | 25 | - |
| 46 | g16858.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1295 | 1317 | - |
| 47 | g16858.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1405 | 1427 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0017154 | semaphorin receptor activity | MF |
| GO:0007165 | signal transduction | BP |
| GO:0005515 | protein binding | MF |
| GO:0071526 | semaphorin-plexin signaling pathway | BP |
KEGG
Orthology
- This transcript has been annotated with K06820 (plexin A)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
