General information for g1690.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g1690 is located on chr_3: 12568870..12570087 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1690 | g1690.t1 | isoform | g1690.t1 | 12568870 | 12570087 |
| chr_3 | g1690 | g1690.t1 | exon | g1690.t1.exon1 | 12568870 | 12570087 |
| chr_3 | g1690 | g1690.t1 | cds | g1690.t1.CDS1 | 12568870 | 12570087 |
| chr_3 | g1690 | g1690.t1 | TSS | g1690.t1 | NA | NA |
| chr_3 | g1690 | g1690.t1 | TTS | g1690.t1 | NA | NA |
Sequences
>g1690.t1 Gene=g1690 Length=1218
ATGGTACGTTTTAACCGAAGGACACACAGTGAGCGTCAAGAGGAACGCCACACCCCTACT
TTACCAGTTCCGCAAGTTCCTTCACCGCTTCGTGCTGATCTCGCTAACTATCGAATTCCT
CGTCGTCAAATTTCTCCTGAACAAGAAATTCAAGTCTCACAACCTCAACCAGAAGCAAGA
GAACAGCAATCTCCATCACGGGAGAATCGTCATTCACGCAAACGTGAACGTTCACGACAC
AATCGTCGACGTCGCAATTCTCCATCACCACGCCACCACCGTGGTCGTGACCACTCTCTC
GAACGCCATCGTCGTCGCATTAGACGATCAAGATCACCAAGACGTGAAGTTCGTTTCCAA
CATGTTCACGAAGAGATGGAAATCTCACCAGTTCGCGAACCTCCACGTCCAGCTCATCCT
CCGCAACGTCGGAATTCAATTCATCGTCGTCCACCAGCTCCAGGTAATAATTTACAACTT
GCGTTAGCAGCTAGACTGGGACCCATCCCAGCAAGCAGCCCATTAGTTCGCGTCGTCCAA
AGACGTACGATTTCCGTCTTAAAATTCGAGCGAGTTCCAACCAACATTGGCTTGCTCAAT
TTTCTTACTCTACTTGGCCGCGAAATGCGCAGCGTTGTTGGTGCAACACGTCTCTATGAT
TATGAGCAAAAAATTATTGGTGACTCTATTTTTGTTTACCTCGTTGATCAACAAGAAATA
GATGCTGCGGTCGGACGAGGGTTCACATTTAATTTTTCAACAGGACAGCAGCTTATTACG
CCATTGTTGCTCTCTGCTGCTATCACTTCTATTAATTTTGCCGATGCTCAGGATCCAACC
TTGAGCTTAATTCCCACTCTTATGCTTCGCAATCTTATTCCAGTGACAACTCGCCAAGCA
ATTGCTTCAGCAATTGATGCAGTTGACATAGTATCGCAACGTGTCAATTACGTGACTCAT
GTTCGCTTGCCAGCTAAAGGACTCGATTTAGCAAAAACGTCCTCATTAGCATTTGTCGGC
ATTGATAATCTTGAGCAAGTCAATCAGTTGGATGGTCAGGAAATCCAGCGAGTTGGACGA
TCTGTACCACTCCATAAAAGTAAGCAAGTTCCTGTTTTGGTTCCAACTGGATTTATGCGT
CAAGAACGCGATAGTGCCTGGGCTCAACGTGCCGCGCAAGGCAACATGTTAATTGCGAAA
CCTAACCCATTTGGATAA
>g1690.t1 Gene=g1690 Length=405
MVRFNRRTHSERQEERHTPTLPVPQVPSPLRADLANYRIPRRQISPEQEIQVSQPQPEAR
EQQSPSRENRHSRKRERSRHNRRRRNSPSPRHHRGRDHSLERHRRRIRRSRSPRREVRFQ
HVHEEMEISPVREPPRPAHPPQRRNSIHRRPPAPGNNLQLALAARLGPIPASSPLVRVVQ
RRTISVLKFERVPTNIGLLNFLTLLGREMRSVVGATRLYDYEQKIIGDSIFVYLVDQQEI
DAAVGRGFTFNFSTGQQLITPLLLSAAITSINFADAQDPTLSLIPTLMLRNLIPVTTRQA
IASAIDAVDIVSQRVNYVTHVRLPAKGLDLAKTSSLAFVGIDNLEQVNQLDGQEIQRVGR
SVPLHKSKQVPVLVPTGFMRQERDSAWAQRAAQGNMLIAKPNPFG
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g1690.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 151 | - |
| 5 | g1690.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 18 | - |
| 1 | g1690.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 46 | 62 | - |
| 3 | g1690.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 72 | 116 | - |
| 4 | g1690.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 117 | 132 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed