Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Inositol monophosphatase 2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g16900 g16900.t1 TSS g16900.t1 11647397 11647397
chr_4 g16900 g16900.t1 isoform g16900.t1 11647408 11648442
chr_4 g16900 g16900.t1 exon g16900.t1.exon1 11647408 11647607
chr_4 g16900 g16900.t1 cds g16900.t1.CDS1 11647408 11647607
chr_4 g16900 g16900.t1 exon g16900.t1.exon2 11647770 11648442
chr_4 g16900 g16900.t1 cds g16900.t1.CDS2 11647770 11648442
chr_4 g16900 g16900.t1 TTS g16900.t1 11648531 11648531

Sequences

>g16900.t1 Gene=g16900 Length=873
ATGTCACCAGAAGAAATAGACGATTGTTTTGAATTTGTCCGTGATTTAGTAAGAAAATGT
GGTGAAGTTCTTTTAGAAGGTTTTAAAGATTGTGGTGAAGTGACTATAAAAACTGCTGAT
CATGATCTTGTGACATTTTATGATGGAAAAATTGAAGAAATTCTCATTGAAGGAATTAAA
GAAAAATATCCAGATCATAAATTTATAGCCGAAGAAGATTCAGCAACAAAAAATCGAGAA
AATATTTTAACATCATTGCCTTCTTGGATAATCGACCCAATTGATGGAACAATAAATTTT
GTCAAAAGACTTCATTTCGTCTGCATTTCTGTTGCTTTTGTCATTGACCGTCAATTAAAT
TTTGCATTTCTTTACAATCCAACATTGAATGAATTTTTTCATGCACGTAAAAATCAAGGA
GCATTTTTGAATGGAAAAATAATTTCAGCAAGTAAAAAAGAAGAACTTCGTGGATCTTTA
GTTGCACATGAAATTTCACTTGGTTGTGTGCCAGAATTTACAGAAGCTTTTATTGAAAGA
GCAAGAATTTTTCTTTTAAAAACAATTGGAATTAGAGCAATTGGATCAGCAGCATTAACA
TTAGGCTATGTCGCAAATGGCACAATTGATGCTTATAATATTGAACATTTGAAACCATGG
GATATCGCTGCAGGAGCTTTGATTATAAAAGAAGCTGGTGGAGTTGTGATTGATAAAAAT
GGTGGGGAAATTAATTTGATGAAACCTGACATCATTGCAGCTGGAACAATGAAAATGGCA
ATGGAAATTAAAGAATTGCTTGATGAAATTGACCAAAAATTAGAAAAAGAAGGAAAATTG
CCAAGGCAATTGTTTGAGAAAAGAAATAAATGA

>g16900.t1 Gene=g16900 Length=290
MSPEEIDDCFEFVRDLVRKCGEVLLEGFKDCGEVTIKTADHDLVTFYDGKIEEILIEGIK
EKYPDHKFIAEEDSATKNRENILTSLPSWIIDPIDGTINFVKRLHFVCISVAFVIDRQLN
FAFLYNPTLNEFFHARKNQGAFLNGKIISASKKEELRGSLVAHEISLGCVPEFTEAFIER
ARIFLLKTIGIRAIGSAALTLGYVANGTIDAYNIEHLKPWDIAAGALIIKEAGGVVIDKN
GGEINLMKPDIIAAGTMKMAMEIKELLDEIDQKLEKEGKLPRQLFEKRNK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
19 g16900.t1 CDD cd01639 IMPase 9 254 1.27193E-92
17 g16900.t1 Gene3D G3DSA:3.30.540.10 - 3 147 1.3E-38
18 g16900.t1 Gene3D G3DSA:3.40.190.80 - 150 278 4.0E-29
2 g16900.t1 PANTHER PTHR20854:SF25 INOSITOL-1-MONOPHOSPHATASE 4 276 6.6E-97
3 g16900.t1 PANTHER PTHR20854 INOSITOL MONOPHOSPHATASE 4 276 6.6E-97
7 g16900.t1 PRINTS PR00378 Lithium-sensitive myo-inositol monophosphatase family signature 20 39 2.9E-10
10 g16900.t1 PRINTS PR00377 Inositol monophosphatase superfamily signature 42 62 5.7E-42
9 g16900.t1 PRINTS PR00377 Inositol monophosphatase superfamily signature 64 80 5.7E-42
8 g16900.t1 PRINTS PR00377 Inositol monophosphatase superfamily signature 89 105 5.7E-42
4 g16900.t1 PRINTS PR00378 Lithium-sensitive myo-inositol monophosphatase family signature 112 122 2.9E-10
11 g16900.t1 PRINTS PR00377 Inositol monophosphatase superfamily signature 138 161 5.7E-42
5 g16900.t1 PRINTS PR00378 Lithium-sensitive myo-inositol monophosphatase family signature 140 158 2.9E-10
13 g16900.t1 PRINTS PR00377 Inositol monophosphatase superfamily signature 186 207 5.7E-42
12 g16900.t1 PRINTS PR00377 Inositol monophosphatase superfamily signature 217 241 5.7E-42
6 g16900.t1 PRINTS PR00378 Lithium-sensitive myo-inositol monophosphatase family signature 245 267 2.9E-10
1 g16900.t1 Pfam PF00459 Inositol monophosphatase family 11 263 5.3E-59
16 g16900.t1 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 89 102 -
15 g16900.t1 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 220 234 -
14 g16900.t1 SUPERFAMILY SSF56655 Carbohydrate phosphatase 7 269 6.28E-69

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0046855 inositol phosphate dephosphorylation BP
GO:0008934 inositol monophosphate 1-phosphatase activity MF
GO:0046854 phosphatidylinositol phosphate biosynthetic process BP

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values