General information for g16910.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as DnaJ homolog shv.
Parent gene
- The parent gene g16910 is located on chr_4: 11694948..11695549 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16910 | g16910.t1 | TSS | g16910.t1 | 11693866 | 11693866 |
| chr_4 | g16910 | g16910.t1 | isoform | g16910.t1 | 11694143 | 11695549 |
| chr_4 | g16910 | g16910.t1 | exon | g16910.t1.exon1 | 11694143 | 11694263 |
| chr_4 | g16910 | g16910.t1 | cds | g16910.t1.CDS1 | 11694143 | 11694263 |
| chr_4 | g16910 | g16910.t1 | exon | g16910.t1.exon2 | 11694690 | 11694871 |
| chr_4 | g16910 | g16910.t1 | cds | g16910.t1.CDS2 | 11694690 | 11694871 |
| chr_4 | g16910 | g16910.t1 | exon | g16910.t1.exon3 | 11694932 | 11695549 |
| chr_4 | g16910 | g16910.t1 | cds | g16910.t1.CDS3 | 11694932 | 11695549 |
| chr_4 | g16910 | g16910.t1 | TTS | g16910.t1 | 11695717 | 11695717 |
Sequences
>g16910.t1 Gene=g16910 Length=921
ATGCATCCAGATAAGAACAAAGATGATCCACAAGCATCAGAGAAATTTGCAGATTTGTCA
GCTGCTTATGAGATTTTAAGTGATGAAGATAAAAGAAAATTGTATGATCGATGTGGAGAA
GAATGCGTCAAAAAAGAAGGAATGTTTGACAACAATGGAATGGATCCATTTGCATCATTC
TTTGGTGATTTTGGATTCAACTTTGGTGGACAAGAACATCGACAAGAAGTTCATAAAGGT
GCAAATATTGTCGTTGATTTGTTTGCAAGTTTGGAAGAAATTTATACAGGAAATTTTGTA
GAGATAACACGAAATAAACCAATACTTAAACCAGCAGCAGGAACACGTAAATGCAATTGT
CGTCAAGAAATGGTGACAAGAAATCTTGGTCCAGGTCGATTCCAAATGATGCAACAAACA
GTCTGTGATGAATGTCCAAATGTAAAACTTGTTAATGAAGAGCGAATTCTTGAAGTTGAA
ATTGAAACTGGAGTTCGTGATGGACATGAAGAAAGATTTGTTGCAGAAGGTGAGCCACAT
ATGGATGGTGAACCTGGTGATTTAGTGCTCAGAATTAAACAAATGCCACATCCAGTATTT
GAAAGAAGAGGTGATGATTTATACACAAATGTTACAATTAGTCTACAAGATGCTTTGACT
GGTTTTACAATGGATATTACACATCTTGATGGCCATAAAGTTAACATTGTAAGAGAAAAA
GTTACATGGCCTGGTGCACGTATTAGAAAGAAGGGTGAAGGCATGCCAAATTATGAAAAC
AACAATCTTTTTGGAACTCTTTTCATCACATTTGATGTTGAATTCCCAAAACAAGACTTT
AGTGAAGAACAGAAAGAAAAATTGAAAGAAATTTTGGCACAAAAATCTAACAATAAAGTT
TATAATGGTCTGCGGATGTAA
>g16910.t1 Gene=g16910 Length=306
MHPDKNKDDPQASEKFADLSAAYEILSDEDKRKLYDRCGEECVKKEGMFDNNGMDPFASF
FGDFGFNFGGQEHRQEVHKGANIVVDLFASLEEIYTGNFVEITRNKPILKPAAGTRKCNC
RQEMVTRNLGPGRFQMMQQTVCDECPNVKLVNEERILEVEIETGVRDGHEERFVAEGEPH
MDGEPGDLVLRIKQMPHPVFERRGDDLYTNVTISLQDALTGFTMDITHLDGHKVNIVREK
VTWPGARIRKKGEGMPNYENNNLFGTLFITFDVEFPKQDFSEEQKEKLKEILAQKSNNKV
YNGLRM
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 13 | g16910.t1 | CDD | cd06257 | DnaJ | 2 | 28 | 1.61222E-9 |
| 14 | g16910.t1 | CDD | cd10747 | DnaJ_C | 81 | 277 | 5.36887E-47 |
| 12 | g16910.t1 | Coils | Coil | Coil | 278 | 298 | - |
| 9 | g16910.t1 | Gene3D | G3DSA:1.10.287.110 | - | 1 | 73 | 2.4E-14 |
| 11 | g16910.t1 | Gene3D | G3DSA:2.60.260.20 | Urease metallochaperone UreE | 74 | 195 | 3.3E-19 |
| 10 | g16910.t1 | Gene3D | G3DSA:2.60.260.20 | Urease metallochaperone UreE | 196 | 303 | 1.1E-29 |
| 3 | g16910.t1 | PANTHER | PTHR44298 | DNAJ HOMOLOG SUBFAMILY B MEMBER 11 | 1 | 305 | 1.7E-138 |
| 4 | g16910.t1 | PRINTS | PR00625 | DnaJ domain signature | 11 | 31 | 3.4E-7 |
| 5 | g16910.t1 | PRINTS | PR00625 | DnaJ domain signature | 31 | 50 | 3.4E-7 |
| 2 | g16910.t1 | Pfam | PF00226 | DnaJ domain | 1 | 36 | 2.8E-12 |
| 1 | g16910.t1 | Pfam | PF01556 | DnaJ C terminal domain | 84 | 276 | 7.0E-36 |
| 15 | g16910.t1 | ProSitePatterns | PS00636 | Nt-dnaJ domain signature. | 16 | 35 | - |
| 16 | g16910.t1 | ProSiteProfiles | PS50076 | dnaJ domain profile. | 1 | 39 | 13.785 |
| 8 | g16910.t1 | SUPERFAMILY | SSF46565 | Chaperone J-domain | 1 | 70 | 2.36E-15 |
| 6 | g16910.t1 | SUPERFAMILY | SSF49493 | HSP40/DnaJ peptide-binding domain | 79 | 198 | 1.12E-12 |
| 7 | g16910.t1 | SUPERFAMILY | SSF49493 | HSP40/DnaJ peptide-binding domain | 199 | 286 | 1.96E-22 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006457 | protein folding | BP |
| GO:0051082 | unfolded protein binding | MF |
KEGG
Orthology
- This transcript has been annotated with K09517 (DnaJ homolog subfamily B member 11)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
