General information for g16910.t12
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as DnaJ homolog shv.
Parent gene
- The parent gene g16910 is located on chr_4: 11694948..11695549 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16910 | g16910.t12 | TSS | g16910.t12 | 11693866 | 11693866 |
| chr_4 | g16910 | g16910.t12 | isoform | g16910.t12 | 11694688 | 11695549 |
| chr_4 | g16910 | g16910.t12 | exon | g16910.t12.exon1 | 11694688 | 11694871 |
| chr_4 | g16910 | g16910.t12 | cds | g16910.t12.CDS1 | 11694710 | 11694871 |
| chr_4 | g16910 | g16910.t12 | exon | g16910.t12.exon2 | 11694941 | 11695549 |
| chr_4 | g16910 | g16910.t12 | cds | g16910.t12.CDS2 | 11694941 | 11695549 |
| chr_4 | g16910 | g16910.t12 | TTS | g16910.t12 | 11695717 | 11695717 |
Sequences
>g16910.t12 Gene=g16910 Length=793
AGAATGCGTCAAAAAAGAAGGAATGTTTGACAACAATGGAATGGATCCATTTGCATCATT
CTTTGGTGATTTTGGATTCAACTTTGGTGGACAAGAACATCGACAAGAAGTTCATAAAGG
TGCAAATATTGTCGTTGATTTGTTTGCAAGTTTGGAAGAAATTTATACAGGAAATTTTGT
AGAGAATAAACCAATACTTAAACCAGCAGCAGGAACACGTAAATGCAATTGTCGTCAAGA
AATGGTGACAAGAAATCTTGGTCCAGGTCGATTCCAAATGATGCAACAAACAGTCTGTGA
TGAATGTCCAAATGTAAAACTTGTTAATGAAGAGCGAATTCTTGAAGTTGAAATTGAAAC
TGGAGTTCGTGATGGACATGAAGAAAGATTTGTTGCAGAAGGTGAGCCACATATGGATGG
TGAACCTGGTGATTTAGTGCTCAGAATTAAACAAATGCCACATCCAGTATTTGAAAGAAG
AGGTGATGATTTATACACAAATGTTACAATTAGTCTACAAGATGCTTTGACTGGTTTTAC
AATGGATATTACACATCTTGATGGCCATAAAGTTAACATTGTAAGAGAAAAAGTTACATG
GCCTGGTGCACGTATTAGAAAGAAGGGTGAAGGCATGCCAAATTATGAAAACAACAATCT
TTTTGGAACTCTTTTCATCACATTTGATGTTGAATTCCCAAAACAAGACTTTAGTGAAGA
ACAGAAAGAAAAATTGAAAGAAATTTTGGCACAAAAATCTAACAATAAAGTTTATAATGG
TCTGCGGATGTAA
>g16910.t12 Gene=g16910 Length=256
MFDNNGMDPFASFFGDFGFNFGGQEHRQEVHKGANIVVDLFASLEEIYTGNFVENKPILK
PAAGTRKCNCRQEMVTRNLGPGRFQMMQQTVCDECPNVKLVNEERILEVEIETGVRDGHE
ERFVAEGEPHMDGEPGDLVLRIKQMPHPVFERRGDDLYTNVTISLQDALTGFTMDITHLD
GHKVNIVREKVTWPGARIRKKGEGMPNYENNNLFGTLFITFDVEFPKQDFSEEQKEKLKE
ILAQKSNNKVYNGLRM
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g16910.t12 | CDD | cd10747 | DnaJ_C | 97 | 227 | 8.86857E-46 |
| 6 | g16910.t12 | Coils | Coil | Coil | 228 | 248 | - |
| 5 | g16910.t12 | Gene3D | G3DSA:2.60.260.20 | Urease metallochaperone UreE | 146 | 253 | 7.4E-30 |
| 2 | g16910.t12 | PANTHER | PTHR44298 | DNAJ HOMOLOG SUBFAMILY B MEMBER 11 | 5 | 255 | 9.4E-111 |
| 1 | g16910.t12 | Pfam | PF01556 | DnaJ C terminal domain | 37 | 226 | 2.3E-34 |
| 3 | g16910.t12 | SUPERFAMILY | SSF49493 | HSP40/DnaJ peptide-binding domain | 31 | 150 | 2.62E-12 |
| 4 | g16910.t12 | SUPERFAMILY | SSF49493 | HSP40/DnaJ peptide-binding domain | 149 | 236 | 1.44E-22 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006457 | protein folding | BP |
| GO:0051082 | unfolded protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
