General information for g16910.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as DnaJ homolog shv.
Parent gene
- The parent gene g16910 is located on chr_4: 11694948..11695549 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16910 | g16910.t4 | TSS | g16910.t4 | 11693866 | 11693866 |
| chr_4 | g16910 | g16910.t4 | isoform | g16910.t4 | 11694143 | 11695549 |
| chr_4 | g16910 | g16910.t4 | exon | g16910.t4.exon1 | 11694143 | 11694263 |
| chr_4 | g16910 | g16910.t4 | exon | g16910.t4.exon2 | 11694690 | 11694865 |
| chr_4 | g16910 | g16910.t4 | exon | g16910.t4.exon3 | 11694937 | 11695549 |
| chr_4 | g16910 | g16910.t4 | cds | g16910.t4.CDS1 | 11694998 | 11695549 |
| chr_4 | g16910 | g16910.t4 | TTS | g16910.t4 | 11695717 | 11695717 |
Sequences
>g16910.t4 Gene=g16910 Length=910
ATGCATCCAGATAAGAACAAAGATGATCCACAAGCATCAGAGAAATTTGCAGATTTGTCA
GCTGCTTATGAGATTTTAAGTGATGAAGATAAAAGAAAATTGTATGATCGATGTGGAGAA
GAATGCGTCAAAAAAGAAGGAATGTTTGACAACAATGGAATGGATCCATTTGCATCATTC
TTTGGTGATTTTGGATTCAACTTTGGTGGACAAGAACATCGACAAGAAGTTCATAAAGGT
GCAAATATTGTCGTTGATTTGTTTGCAAGTTTGGAAGAAATTTATACAGGAAATTTTACG
AAATAAACCAATACTTAAACCAGCAGCAGGAACACGTAAATGCAATTGTCGTCAAGAAAT
GGTGACAAGAAATCTTGGTCCAGGTCGATTCCAAATGATGCAACAAACAGTCTGTGATGA
ATGTCCAAATGTAAAACTTGTTAATGAAGAGCGAATTCTTGAAGTTGAAATTGAAACTGG
AGTTCGTGATGGACATGAAGAAAGATTTGTTGCAGAAGGTGAGCCACATATGGATGGTGA
ACCTGGTGATTTAGTGCTCAGAATTAAACAAATGCCACATCCAGTATTTGAAAGAAGAGG
TGATGATTTATACACAAATGTTACAATTAGTCTACAAGATGCTTTGACTGGTTTTACAAT
GGATATTACACATCTTGATGGCCATAAAGTTAACATTGTAAGAGAAAAAGTTACATGGCC
TGGTGCACGTATTAGAAAGAAGGGTGAAGGCATGCCAAATTATGAAAACAACAATCTTTT
TGGAACTCTTTTCATCACATTTGATGTTGAATTCCCAAAACAAGACTTTAGTGAAGAACA
GAAAGAAAAATTGAAAGAAATTTTGGCACAAAAATCTAACAATAAAGTTTATAATGGTCT
GCGGATGTAA
>g16910.t4 Gene=g16910 Length=183
MVTRNLGPGRFQMMQQTVCDECPNVKLVNEERILEVEIETGVRDGHEERFVAEGEPHMDG
EPGDLVLRIKQMPHPVFERRGDDLYTNVTISLQDALTGFTMDITHLDGHKVNIVREKVTW
PGARIRKKGEGMPNYENNNLFGTLFITFDVEFPKQDFSEEQKEKLKEILAQKSNNKVYNG
LRM
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g16910.t4 | CDD | cd10747 | DnaJ_C | 24 | 154 | 1.13662E-45 |
| 7 | g16910.t4 | Coils | Coil | Coil | 155 | 175 | - |
| 5 | g16910.t4 | Gene3D | G3DSA:2.60.260.20 | Urease metallochaperone UreE | 8 | 72 | 4.0E-12 |
| 6 | g16910.t4 | Gene3D | G3DSA:2.60.260.20 | Urease metallochaperone UreE | 73 | 180 | 3.2E-30 |
| 2 | g16910.t4 | PANTHER | PTHR44298 | DNAJ HOMOLOG SUBFAMILY B MEMBER 11 | 1 | 182 | 1.5E-83 |
| 1 | g16910.t4 | Pfam | PF01556 | DnaJ C terminal domain | 28 | 153 | 5.4E-33 |
| 4 | g16910.t4 | SUPERFAMILY | SSF49493 | HSP40/DnaJ peptide-binding domain | 32 | 78 | 9.81E-9 |
| 3 | g16910.t4 | SUPERFAMILY | SSF49493 | HSP40/DnaJ peptide-binding domain | 76 | 163 | 6.54E-23 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006457 | protein folding | BP |
| GO:0051082 | unfolded protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed