General information for g16910.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as DnaJ homolog shv.
Parent gene
- The parent gene g16910 is located on chr_4: 11694948..11695549 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16910 | g16910.t6 | TSS | g16910.t6 | 11693866 | 11693866 |
| chr_4 | g16910 | g16910.t6 | isoform | g16910.t6 | 11694143 | 11695549 |
| chr_4 | g16910 | g16910.t6 | exon | g16910.t6.exon1 | 11694143 | 11694263 |
| chr_4 | g16910 | g16910.t6 | cds | g16910.t6.CDS1 | 11694143 | 11694263 |
| chr_4 | g16910 | g16910.t6 | exon | g16910.t6.exon2 | 11694690 | 11694871 |
| chr_4 | g16910 | g16910.t6 | cds | g16910.t6.CDS2 | 11694690 | 11694871 |
| chr_4 | g16910 | g16910.t6 | exon | g16910.t6.exon3 | 11694932 | 11695124 |
| chr_4 | g16910 | g16910.t6 | cds | g16910.t6.CDS3 | 11694932 | 11695124 |
| chr_4 | g16910 | g16910.t6 | exon | g16910.t6.exon4 | 11695239 | 11695549 |
| chr_4 | g16910 | g16910.t6 | cds | g16910.t6.CDS4 | 11695239 | 11695549 |
| chr_4 | g16910 | g16910.t6 | TTS | g16910.t6 | 11695717 | 11695717 |
Sequences
>g16910.t6 Gene=g16910 Length=807
ATGCATCCAGATAAGAACAAAGATGATCCACAAGCATCAGAGAAATTTGCAGATTTGTCA
GCTGCTTATGAGATTTTAAGTGATGAAGATAAAAGAAAATTGTATGATCGATGTGGAGAA
GAATGCGTCAAAAAAGAAGGAATGTTTGACAACAATGGAATGGATCCATTTGCATCATTC
TTTGGTGATTTTGGATTCAACTTTGGTGGACAAGAACATCGACAAGAAGTTCATAAAGGT
GCAAATATTGTCGTTGATTTGTTTGCAAGTTTGGAAGAAATTTATACAGGAAATTTTGTA
GAGATAACACGAAATAAACCAATACTTAAACCAGCAGCAGGAACACGTAAATGCAATTGT
CGTCAAGAAATGGTGACAAGAAATCTTGGTCCAGGTCGATTCCAAATGATGCAACAAACA
GTCTGTGATGAATGTCCAAATGTAAAACTTGTTAATGAAGAGCGAATTCTTGAAGTTGAA
ATTGAAACTGGAGTTCGTGATGATTTATACACAAATGTTACAATTAGTCTACAAGATGCT
TTGACTGGTTTTACAATGGATATTACACATCTTGATGGCCATAAAGTTAACATTGTAAGA
GAAAAAGTTACATGGCCTGGTGCACGTATTAGAAAGAAGGGTGAAGGCATGCCAAATTAT
GAAAACAACAATCTTTTTGGAACTCTTTTCATCACATTTGATGTTGAATTCCCAAAACAA
GACTTTAGTGAAGAACAGAAAGAAAAATTGAAAGAAATTTTGGCACAAAAATCTAACAAT
AAAGTTTATAATGGTCTGCGGATGTAA
>g16910.t6 Gene=g16910 Length=268
MHPDKNKDDPQASEKFADLSAAYEILSDEDKRKLYDRCGEECVKKEGMFDNNGMDPFASF
FGDFGFNFGGQEHRQEVHKGANIVVDLFASLEEIYTGNFVEITRNKPILKPAAGTRKCNC
RQEMVTRNLGPGRFQMMQQTVCDECPNVKLVNEERILEVEIETGVRDDLYTNVTISLQDA
LTGFTMDITHLDGHKVNIVREKVTWPGARIRKKGEGMPNYENNNLFGTLFITFDVEFPKQ
DFSEEQKEKLKEILAQKSNNKVYNGLRM
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 13 | g16910.t6 | CDD | cd06257 | DnaJ | 2 | 28 | 1.55452E-9 |
| 14 | g16910.t6 | CDD | cd10747 | DnaJ_C | 81 | 239 | 7.79404E-23 |
| 12 | g16910.t6 | Coils | Coil | Coil | 240 | 260 | - |
| 9 | g16910.t6 | Gene3D | G3DSA:1.10.287.110 | - | 1 | 74 | 2.0E-14 |
| 10 | g16910.t6 | Gene3D | G3DSA:2.60.260.20 | Urease metallochaperone UreE | 75 | 165 | 1.9E-7 |
| 11 | g16910.t6 | Gene3D | G3DSA:2.60.260.20 | Urease metallochaperone UreE | 166 | 239 | 2.7E-21 |
| 4 | g16910.t6 | PANTHER | PTHR44298 | DNAJ HOMOLOG SUBFAMILY B MEMBER 11 | 1 | 167 | 9.3E-113 |
| 3 | g16910.t6 | PANTHER | PTHR44298 | DNAJ HOMOLOG SUBFAMILY B MEMBER 11 | 167 | 267 | 9.3E-113 |
| 5 | g16910.t6 | PRINTS | PR00625 | DnaJ domain signature | 11 | 31 | 2.7E-7 |
| 6 | g16910.t6 | PRINTS | PR00625 | DnaJ domain signature | 31 | 50 | 2.7E-7 |
| 2 | g16910.t6 | Pfam | PF00226 | DnaJ domain | 1 | 36 | 2.3E-12 |
| 1 | g16910.t6 | Pfam | PF01556 | DnaJ C terminal domain | 167 | 238 | 1.2E-13 |
| 15 | g16910.t6 | ProSitePatterns | PS00636 | Nt-dnaJ domain signature. | 16 | 35 | - |
| 16 | g16910.t6 | ProSiteProfiles | PS50076 | dnaJ domain profile. | 1 | 39 | 13.785 |
| 8 | g16910.t6 | SUPERFAMILY | SSF46565 | Chaperone J-domain | 1 | 70 | 1.83E-15 |
| 7 | g16910.t6 | SUPERFAMILY | SSF49493 | HSP40/DnaJ peptide-binding domain | 167 | 248 | 1.07E-19 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006457 | protein folding | BP |
| GO:0051082 | unfolded protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed