General information for g16912.t10
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Selenide, water dikinase 2.
Parent gene
- The parent gene g16912 is located on chr_4: 11699272..11702680 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16912 | g16912.t10 | TSS | g16912.t10 | 11698815 | 11698815 |
| chr_4 | g16912 | g16912.t10 | isoform | g16912.t10 | 11698889 | 11702680 |
| chr_4 | g16912 | g16912.t10 | exon | g16912.t10.exon1 | 11698889 | 11699018 |
| chr_4 | g16912 | g16912.t10 | exon | g16912.t10.exon2 | 11699077 | 11699193 |
| chr_4 | g16912 | g16912.t10 | cds | g16912.t10.CDS1 | 11699190 | 11699193 |
| chr_4 | g16912 | g16912.t10 | exon | g16912.t10.exon3 | 11699254 | 11700425 |
| chr_4 | g16912 | g16912.t10 | cds | g16912.t10.CDS2 | 11699254 | 11700074 |
| chr_4 | g16912 | g16912.t10 | exon | g16912.t10.exon4 | 11702575 | 11702680 |
| chr_4 | g16912 | g16912.t10 | TTS | g16912.t10 | NA | NA |
Sequences
>g16912.t10 Gene=g16912 Length=1525
ATGAGTGAGAAAGTGAAATTAACAAAATTTAGTACTTTGCGTGGATGAGGTTGCAAGGTA
CCCGAAGATGTACTCAAAAAACTTCTTAATAAAGTTTATGAGAAATCTTTGGGAAAATCC
GATTCACAAGCAATCGGAATAGGATTAGATTCAGCAATAATTCCATTAAACAACAACAAC
AAAAATCTTTATTTAGTTCAATCAGTTGATTTTTTCTATCCACTTTGTGATGATGCAAAC
TTAATGGGTAAAATCGCGTTTGCCAATGTAGTCAGTGATATTTACTCATGTGGTGTTGCT
GATATCGATGAAGTAAAAATAATTTTAAGTATGCCGGATGAACTCAATGAGGAACAACAG
CAACAAGTGGCAAATGATCTTATCTCTGGATTTCGTGAGTCAGCAAAGCTCATAAAATGC
AGATTGACATTGGAAAGCATCAACATCAATCCTTGGTGCATGATTGGTGGGATTGCAACT
TCAATATGCACAAAAGATGAGCTTGTTTTCCCAACTGGTGCTCTTCCTGGTGATGCTATA
ATTTTAACTAAACCACTTGGTGTTCAATTGGCAACAAATGCAAAAATTTGGCTTGATGAA
AATTCTGAAAGTTGGAAAAAATTGAGTCAACATTTGACTGAAGATGATGTGAAAGAAAGC
TATGAAAAAGCATTAAAATCCATGGTAACTTTGAATCATCTTGGTGCTAAATTGATGCAG
AAATATAAAGCTCATTGTGCTACAGATGTGACTGGATTTGGCATTATTGGACATGCTGAA
AATTTGATTGAATTTCAAGAACAAAATGTGAATTTTGTCATCAATAAAATGCCATTAATC
AAGCATGTTAAGAAAATGTCAGAAATTCTCAACAGAACACAAAAAATGTTGAATGGAAAA
ATGGTTGAAACATCAGGTGGATTATTTTTGTGTTTACCAAGTGAAAATGCTCAAGCATTT
TGTGATGATTTCTTTTCTTCATCTGGTGATGCATGTTGGATTATTGGACGAGTTGAAAAA
GGCGATAAAAAAGTTTTACTGGAAAATGTTGAATTTATTGAAATTTAAAAATTTTAATTG
TTTTTGTTTATAAAATTTCATAAAATTTATGGTAATTTTATTGATATTTTTGGTAAACCT
ATGAATGATATATGCCAAAGGCTGATAAAAAAGCACGTGTATATCAGAATGATTTTTTAC
TAAATTCAATAAAAATTTTTAGGGTTCTGCACTTGCATGTAACTTGATTGGTGACTTGAC
TAAATGCATTCAAGTTGACTTAGGAAAATTTCTCTATTTTATTCAGAATTCATTCAATTT
GAACAAAATTTTGCAAATTTAAAGACTATTGACTTTCATACAAATATGCAAAATTTCAAC
GAGATTAAAGAAAATCTGAATGAAAAAAAGAAATTTTTTTGTAAGTCAACTTGCATGAAT
TTAGTCAAGTCATCAGTCAAGTATTAATGCAAGTGCCGAATTTACATTTTTCATATATAA
GGATAATTTAAAAAAGCCTACAATT
>g16912.t10 Gene=g16912 Length=274
MGKIAFANVVSDIYSCGVADIDEVKIILSMPDELNEEQQQQVANDLISGFRESAKLIKCR
LTLESININPWCMIGGIATSICTKDELVFPTGALPGDAIILTKPLGVQLATNAKIWLDEN
SESWKKLSQHLTEDDVKESYEKALKSMVTLNHLGAKLMQKYKAHCATDVTGFGIIGHAEN
LIEFQEQNVNFVINKMPLIKHVKKMSEILNRTQKMLNGKMVETSGGLFLCLPSENAQAFC
DDFFSSSGDACWIIGRVEKGDKKVLLENVEFIEI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g16912.t10 | Gene3D | G3DSA:3.30.1330.10 | - | 1 | 87 | 0 |
| 4 | g16912.t10 | Gene3D | G3DSA:3.90.650.10 | - | 88 | 273 | 0 |
| 2 | g16912.t10 | PANTHER | PTHR10256 | SELENIDE, WATER DIKINASE | 1 | 269 | 0 |
| 1 | g16912.t10 | Pfam | PF02769 | AIR synthase related protein, C-terminal domain | 95 | 264 | 0 |
| 3 | g16912.t10 | SUPERFAMILY | SSF56042 | PurM C-terminal domain-like | 89 | 265 | 0 |
| 6 | g16912.t10 | TIGRFAM | TIGR00476 | selD: selenide, water dikinase | 1 | 214 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005524 | ATP binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
