Gene loci information

Transcript annotation

  • This transcript has been annotated as Selenide, water dikinase 2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g16912 g16912.t11 TSS g16912.t11 11698815 11698815
chr_4 g16912 g16912.t11 isoform g16912.t11 11699272 11700488
chr_4 g16912 g16912.t11 exon g16912.t11.exon1 11699272 11700488
chr_4 g16912 g16912.t11 cds g16912.t11.CDS1 11699337 11700074
chr_4 g16912 g16912.t11 TTS g16912.t11 11700544 11700544

Sequences

>g16912.t11 Gene=g16912 Length=1217
ATGTAGTCAGTGATATTTACTCATGTGGTGTTGCTGATATCGATGAAGTAAAAATAATTT
TAAGTATGCCGGATGAACTCAATGAGGAACAACAGCAACAAGTGGCAAATGATCTTATCT
CTGGATTTCGTGAGTCAGCAAAGCTCATAAAATGCAGATTGACATTGGAAAGCATCAACA
TCAATCCTTGGTGCATGATTGGTGGGATTGCAACTTCAATATGCACAAAAGATGAGCTTG
TTTTCCCAACTGGTGCTCTTCCTGGTGATGCTATAATTTTAACTAAACCACTTGGTGTTC
AATTGGCAACAAATGCAAAAATTTGGCTTGATGAAAATTCTGAAAGTTGGAAAAAATTGA
GTCAACATTTGACTGAAGATGATGTGAAAGAAAGCTATGAAAAAGCATTAAAATCCATGG
TAACTTTGAATCATCTTGGTGCTAAATTGATGCAGAAATATAAAGCTCATTGTGCTACAG
ATGTGACTGGATTTGGCATTATTGGACATGCTGAAAATTTGATTGAATTTCAAGAACAAA
ATGTGAATTTTGTCATCAATAAAATGCCATTAATCAAGCATGTTAAGAAAATGTCAGAAA
TTCTCAACAGAACACAAAAAATGTTGAATGGAAAAATGGTTGAAACATCAGGTGGATTAT
TTTTGTGTTTACCAAGTGAAAATGCTCAAGCATTTTGTGATGATTTCTTTTCTTCATCTG
GTGATGCATGTTGGATTATTGGACGAGTTGAAAAAGGCGATAAAAAAGTTTTACTGGAAA
ATGTTGAATTTATTGAAATTTAAAAATTTTAATTGTTTTTGTTTATAAAATTTCATAAAA
TTTATGGTAATTTTATTGATATTTTTGGTAAACCTATGAATGATATATGCCAAAGGCTGA
TAAAAAAGCACGTGTATATCAGAATGATTTTTTACTAAATTCAATAAAAATTTTTAGGGT
TCTGCACTTGCATGTAACTTGATTGGTGACTTGACTAAATGCATTCAAGTTGACTTAGGA
AAATTTCTCTATTTTATTCAGAATTCATTCAATTTGAACAAAATTTTGCAAATTTAAAGA
CTATTGACTTTCATACAAATATGCAAAATTTCAACGAGATTAAAGAAAATCTGAATGAAA
AAAAGAAATTTTTTGTAAGTCAACTTGCTTATATTAAGTCAAGTCACTAGTCAAGTATGC
AAGTCAAGTGTCGAACC

>g16912.t11 Gene=g16912 Length=245
MPDELNEEQQQQVANDLISGFRESAKLIKCRLTLESININPWCMIGGIATSICTKDELVF
PTGALPGDAIILTKPLGVQLATNAKIWLDENSESWKKLSQHLTEDDVKESYEKALKSMVT
LNHLGAKLMQKYKAHCATDVTGFGIIGHAENLIEFQEQNVNFVINKMPLIKHVKKMSEIL
NRTQKMLNGKMVETSGGLFLCLPSENAQAFCDDFFSSSGDACWIIGRVEKGDKKVLLENV
EFIEI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
4 g16912.t11 Gene3D G3DSA:3.90.650.10 - 30 245 0
2 g16912.t11 PANTHER PTHR10256 SELENIDE, WATER DIKINASE 2 240 0
1 g16912.t11 Pfam PF02769 AIR synthase related protein, C-terminal domain 66 235 0
3 g16912.t11 SUPERFAMILY SSF56042 PurM C-terminal domain-like 60 236 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values