Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Selenide, water dikinase 2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g16912 g16912.t5 TSS g16912.t5 11698815 11698815
chr_4 g16912 g16912.t5 isoform g16912.t5 11698889 11699641
chr_4 g16912 g16912.t5 exon g16912.t5.exon1 11698889 11699018
chr_4 g16912 g16912.t5 exon g16912.t5.exon2 11699077 11699193
chr_4 g16912 g16912.t5 cds g16912.t5.CDS1 11699190 11699193
chr_4 g16912 g16912.t5 exon g16912.t5.exon3 11699254 11699641
chr_4 g16912 g16912.t5 cds g16912.t5.CDS2 11699254 11699639
chr_4 g16912 g16912.t5 TTS g16912.t5 11700544 11700544

Sequences

>g16912.t5 Gene=g16912 Length=635
ATGAGTGAGAAAGTGAAATTAACAAAATTTAGTACTTTGCGTGGATGAGGTTGCAAGGTA
CCCGAAGATGTACTCAAAAAACTTCTTAATAAAGTTTATGAGAAATCTTTGGGAAAATCC
GATTCACAAGCAATCGGAATAGGATTAGATTCAGCAATAATTCCATTAAACAACAACAAC
AAAAATCTTTATTTAGTTCAATCAGTTGATTTTTTCTATCCACTTTGTGATGATGCAAAC
TTAATGGGTAAAATCGCGTTTGCCAATGTAGTCAGTGATATTTACTCATGTGGTGTTGCT
GATATCGATGAAGTAAAAATAATTTTAAGTATGCCGGATGAACTCAATGAGGAACAACAG
CAACAAGTGGCAAATGATCTTATCTCTGGATTTCGTGAGTCAGCAAAGCTCATAAAATGC
AGATTGACATTGGAAAGCATCAACATCAATCCTTGGTGCATGATTGGTGGGATTGCAACT
TCAATATGCACAAAAGATGAGCTTGTTTTCCCAACTGGTGCTCTTCCTGGTGATGCTATA
ATTTTAACTAAACCACTTGGTGTTCAATTGGCAACAAATGCAAAAATTTGGCTTGATGAA
AATTCTGAAAGTTGGAAAAAATTGAGTCAACATTT

>g16912.t5 Gene=g16912 Length=130
MGKIAFANVVSDIYSCGVADIDEVKIILSMPDELNEEQQQQVANDLISGFRESAKLIKCR
LTLESININPWCMIGGIATSICTKDELVFPTGALPGDAIILTKPLGVQLATNAKIWLDEN
SESWKKLSQH

Protein features from InterProScan

Transcript Database ID Name Start End E.value
4 g16912.t5 Gene3D G3DSA:3.30.1330.10 - 1 87 0.00e+00
3 g16912.t5 Gene3D G3DSA:3.90.650.10 - 91 130 4.90e-05
1 g16912.t5 PANTHER PTHR10256 SELENIDE, WATER DIKINASE 1 121 0.00e+00
2 g16912.t5 SUPERFAMILY SSF55326 PurM N-terminal domain-like 1 86 1.83e-05

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values