Gene loci information

Transcript annotation

  • This transcript has been annotated as Phosphoacetylglucosamine mutase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g16921 g16921.t1 TSS g16921.t1 11717148 11717148
chr_4 g16921 g16921.t1 isoform g16921.t1 11717250 11724075
chr_4 g16921 g16921.t1 exon g16921.t1.exon1 11717250 11717337
chr_4 g16921 g16921.t1 cds g16921.t1.CDS1 11717250 11717337
chr_4 g16921 g16921.t1 exon g16921.t1.exon2 11717407 11717428
chr_4 g16921 g16921.t1 cds g16921.t1.CDS2 11717407 11717428
chr_4 g16921 g16921.t1 exon g16921.t1.exon3 11719917 11720920
chr_4 g16921 g16921.t1 cds g16921.t1.CDS3 11719917 11720920
chr_4 g16921 g16921.t1 exon g16921.t1.exon4 11723528 11724075
chr_4 g16921 g16921.t1 cds g16921.t1.CDS4 11723528 11724075
chr_4 g16921 g16921.t1 TTS g16921.t1 11724064 11724064

Sequences

>g16921.t1 Gene=g16921 Length=1662
ATGTCGTCGTCAGTTGATTTACGTACAGTTTATGCCTTTGCGCGTGAATTTCATTCAAAA
GGACCAAACATTGAAAAGTTACTTTATGGCACTGCTGGATTTCGTACACTACATGAAAAA
CTAGAATTCATAGCATTCAGAATGGGACTTTTAGCAACAATTCGATCAAGAAAATTTGGT
GGTCAAGCAATTGGTGTGATGATTACAGCATCACATAATCCTGAATGTGATAATGGTGTA
AAAATTATTGATCCAAAAGGTGAAATGTTAGAACGTGATTGGGAAACGATAGCAACAGAT
CTCGTAAATGTTCCTGATGATAGACTTGAATCAGAAGTAGCAAAAATTATTGCACAAGAA
AAAATTGATATGGGAGCACAATCAAATGTTTTTATTGGCATGGACACGCGTTATCATTCA
CCAGCAATGGGTCGTGCAGTTGTAAATGGTGTAAGAGCATTAAAAGGAAATCTTCGTGAT
TTTGGAATTCTCACGACACCAATGTTGCATTATCTTGTTTATACGCACAATGTCAGAGGT
GCTTATGGTTTTCCAACTGTCGATGGTTATGTCAGTAAACTTGTTAATGCATTTAAACGA
CTTCGTGGTGATGTTTATGAAAATGGAAATTATAAAAATTTTATTCTTTTCGATGGTGCC
AATGGAGTTGGCAGTTTGAAAATGCATGAATTTAATCGTCAACTTGGTCCATCACTTGAA
TGTCAAGTTTTTAATTCAAATGGAAAAATCAATCACAATTGTGGTGCAGATTTTGTAAAA
ACAAATCAAAGAGCACCTCATGGATTGCCAGAACATGAACCAAATACTCGTTGTGTCAGC
GTTGATGGCGATGCTGATAGAATTGTTTACTTTTTTACCGATTCTGATGGTGTTTTTCAT
TTACTTGATGGTGATCGTATTGCAACTTTAATTGCTGATTATCTCATGAATTTGGTTAAA
AAATGTGGAATAAGTTTAAAACTTGGAATTGTTCAAACAGCGTATGCCAATGGTGCATCG
ACTGATTATATTAAACAACAATTGAAAGTTGATGTTGCGTGTGTACCAACTGGAGTAAAA
CATCTGCATCATAAAGCATTGGAGTATGACATTGGTGTCTATTTCGAAGCGAATGGACAT
GGAACAGTAATTTTCAGTGACAGCACAAAAGAAAAAATTTCATCCGCATCAAGATCAAAT
GAGACATCAAACGAACAAAAAGAGTCATTAAGAAAACTTTTGTTAACTATCGATATAATA
AATGAGACAGTTGGTGATGCCATATCGGATATGCTTTTGGTTGAAACAATTCTTCATGCA
AAAGGTTTTAGTCTAAAAGACTGGCTGGCGACATATGAAGATCTTCCAAATACAATTAAG
AAAGTTAAAGTGCAAGATCGAAATATTTTTGAAACTACTGACGCTGAAAGAGTTTGTGTA
AAACCAGATGGATTGCAAGATAAAATTGATGAATTAGTGCGGAAGTATAAAAGAGGTAGA
GCATTTGTGAGGCCTTCAGGGACAGAAGATGTAGTGCGTGTATATGCAGAAGCTGAAAAT
AATGATGATGTGCAGTTGTTGGCTGCTGAAGTTTCAATATTAGTTTATGAAATGGCAAAT
GGCGTTGGAGAAAAACCTTCCATTCCACAACAAAAATTATAA

>g16921.t1 Gene=g16921 Length=553
MSSSVDLRTVYAFAREFHSKGPNIEKLLYGTAGFRTLHEKLEFIAFRMGLLATIRSRKFG
GQAIGVMITASHNPECDNGVKIIDPKGEMLERDWETIATDLVNVPDDRLESEVAKIIAQE
KIDMGAQSNVFIGMDTRYHSPAMGRAVVNGVRALKGNLRDFGILTTPMLHYLVYTHNVRG
AYGFPTVDGYVSKLVNAFKRLRGDVYENGNYKNFILFDGANGVGSLKMHEFNRQLGPSLE
CQVFNSNGKINHNCGADFVKTNQRAPHGLPEHEPNTRCVSVDGDADRIVYFFTDSDGVFH
LLDGDRIATLIADYLMNLVKKCGISLKLGIVQTAYANGASTDYIKQQLKVDVACVPTGVK
HLHHKALEYDIGVYFEANGHGTVIFSDSTKEKISSASRSNETSNEQKESLRKLLLTIDII
NETVGDAISDMLLVETILHAKGFSLKDWLATYEDLPNTIKKVKVQDRNIFETTDAERVCV
KPDGLQDKIDELVRKYKRGRAFVRPSGTEDVVRVYAEAENNDDVQLLAAEVSILVYEMAN
GVGEKPSIPQQKL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
18 g16921.t1 CDD cd03086 PGM3 29 535 0.0
13 g16921.t1 Gene3D G3DSA:1.10.490.170 - 7 182 1.4E-59
16 g16921.t1 Gene3D G3DSA:3.40.120.10 - 215 409 6.3E-13
15 g16921.t1 Gene3D G3DSA:3.40.120.10 - 302 390 6.3E-13
14 g16921.t1 Gene3D G3DSA:3.30.310.50 Major birch pollen allergen Bet v 1 456 542 2.5E-31
5 g16921.t1 PANTHER PTHR45955:SF1 PHOSPHOACETYLGLUCOSAMINE MUTASE 20 543 1.7E-203
6 g16921.t1 PANTHER PTHR45955 PHOSPHOACETYLGLUCOSAMINE MUTASE 20 543 1.7E-203
17 g16921.t1 PIRSF PIRSF016408 PAGM 6 542 4.7E-191
2 g16921.t1 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 62 98 2.1E-7
3 g16921.t1 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 114 180 3.6E-8
1 g16921.t1 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 303 414 9.2E-5
4 g16921.t1 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 481 532 1.0E-10
12 g16921.t1 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 65 74 -
10 g16921.t1 SUPERFAMILY SSF53738 Phosphoglucomutase, first 3 domains 25 115 3.1E-13
9 g16921.t1 SUPERFAMILY SSF53738 Phosphoglucomutase, first 3 domains 118 206 1.1E-14
8 g16921.t1 SUPERFAMILY SSF53738 Phosphoglucomutase, first 3 domains 187 295 2.55E-10
11 g16921.t1 SUPERFAMILY SSF53738 Phosphoglucomutase, first 3 domains 283 383 3.34E-5
7 g16921.t1 SUPERFAMILY SSF55957 Phosphoglucomutase, C-terminal domain 444 547 6.41E-25

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0000287 magnesium ion binding MF
GO:0005975 carbohydrate metabolic process BP
GO:0004610 phosphoacetylglucosamine mutase activity MF
GO:0071704 organic substance metabolic process BP
GO:0016868 intramolecular transferase activity, phosphotransferases MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values