General information for g16921.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Phosphoacetylglucosamine mutase.
Parent gene
- The parent gene g16921 is located on chr_4: 11720440..11724075 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16921 | g16921.t3 | TSS | g16921.t3 | 11717148 | 11717148 |
| chr_4 | g16921 | g16921.t3 | isoform | g16921.t3 | 11717250 | 11720919 |
| chr_4 | g16921 | g16921.t3 | exon | g16921.t3.exon1 | 11717250 | 11717356 |
| chr_4 | g16921 | g16921.t3 | cds | g16921.t3.CDS1 | 11717250 | 11717356 |
| chr_4 | g16921 | g16921.t3 | exon | g16921.t3.exon2 | 11719917 | 11720919 |
| chr_4 | g16921 | g16921.t3 | cds | g16921.t3.CDS2 | 11719917 | 11720919 |
| chr_4 | g16921 | g16921.t3 | TTS | g16921.t3 | NA | NA |
Sequences
>g16921.t3 Gene=g16921 Length=1110
ATGTCGTCGTCAGTTGATTTACGTACAGTTTATGCCTTTGCGCGTGAATTTCATTCAAAA
GGACCAAACATTGAAAAGTTACTTTATGGTAAGACTTTTATTGCACTACATGAAAAACTA
GAATTCATAGCATTCAGAATGGGACTTTTAGCAACAATTCGATCAAGAAAATTTGGTGGT
CAAGCAATTGGTGTGATGATTACAGCATCACATAATCCTGAATGTGATAATGGTGTAAAA
ATTATTGATCCAAAAGGTGAAATGTTAGAACGTGATTGGGAAACGATAGCAACAGATCTC
GTAAATGTTCCTGATGATAGACTTGAATCAGAAGTAGCAAAAATTATTGCACAAGAAAAA
ATTGATATGGGAGCACAATCAAATGTTTTTATTGGCATGGACACGCGTTATCATTCACCA
GCAATGGGTCGTGCAGTTGTAAATGGTGTAAGAGCATTAAAAGGAAATCTTCGTGATTTT
GGAATTCTCACGACACCAATGTTGCATTATCTTGTTTATACGCACAATGTCAGAGGTGCT
TATGGTTTTCCAACTGTCGATGGTTATGTCAGTAAACTTGTTAATGCATTTAAACGACTT
CGTGGTGATGTTTATGAAAATGGAAATTATAAAAATTTTATTCTTTTCGATGGTGCCAAT
GGAGTTGGCAGTTTGAAAATGCATGAATTTAATCGTCAACTTGGTCCATCACTTGAATGT
CAAGTTTTTAATTCAAATGGAAAAATCAATCACAATTGTGGTGCAGATTTTGTAAAAACA
AATCAAAGAGCACCTCATGGATTGCCAGAACATGAACCAAATACTCGTTGTGTCAGCGTT
GATGGCGATGCTGATAGAATTGTTTACTTTTTTACCGATTCTGATGGTGTTTTTCATTTA
CTTGATGGTGATCGTATTGCAACTTTAATTGCTGATTATCTCATGAATTTGGTTAAAAAA
TGTGGAATAAGTTTAAAACTTGGAATTGTTCAAACAGCGTATGCCAATGGTGCATCGACT
GATTATATTAAACAACAATTGAAAGTTGATGTTGCGTGTGTACCAACTGGAGTAAAACAT
CTGCATCATAAAGCATTGGAGTATGACATT
>g16921.t3 Gene=g16921 Length=370
MSSSVDLRTVYAFAREFHSKGPNIEKLLYGKTFIALHEKLEFIAFRMGLLATIRSRKFGG
QAIGVMITASHNPECDNGVKIIDPKGEMLERDWETIATDLVNVPDDRLESEVAKIIAQEK
IDMGAQSNVFIGMDTRYHSPAMGRAVVNGVRALKGNLRDFGILTTPMLHYLVYTHNVRGA
YGFPTVDGYVSKLVNAFKRLRGDVYENGNYKNFILFDGANGVGSLKMHEFNRQLGPSLEC
QVFNSNGKINHNCGADFVKTNQRAPHGLPEHEPNTRCVSVDGDADRIVYFFTDSDGVFHL
LDGDRIATLIADYLMNLVKKCGISLKLGIVQTAYANGASTDYIKQQLKVDVACVPTGVKH
LHHKALEYDI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g16921.t3 | Gene3D | G3DSA:1.10.490.170 | - | 11 | 181 | 3.4E-52 |
| 10 | g16921.t3 | Gene3D | G3DSA:3.40.120.10 | - | 186 | 323 | 4.3E-8 |
| 3 | g16921.t3 | PANTHER | PTHR45955:SF1 | PHOSPHOACETYLGLUCOSAMINE MUTASE | 20 | 370 | 1.5E-120 |
| 4 | g16921.t3 | PANTHER | PTHR45955 | PHOSPHOACETYLGLUCOSAMINE MUTASE | 20 | 370 | 1.5E-120 |
| 1 | g16921.t3 | Pfam | PF02878 | Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I | 61 | 97 | 1.2E-7 |
| 2 | g16921.t3 | Pfam | PF02878 | Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I | 113 | 179 | 2.0E-8 |
| 8 | g16921.t3 | ProSitePatterns | PS00710 | Phosphoglucomutase and phosphomannomutase phosphoserine signature. | 64 | 73 | - |
| 5 | g16921.t3 | SUPERFAMILY | SSF53738 | Phosphoglucomutase, first 3 domains | 60 | 114 | 5.89E-12 |
| 6 | g16921.t3 | SUPERFAMILY | SSF53738 | Phosphoglucomutase, first 3 domains | 116 | 205 | 3.85E-15 |
| 7 | g16921.t3 | SUPERFAMILY | SSF53738 | Phosphoglucomutase, first 3 domains | 186 | 294 | 1.26E-10 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0000287 | magnesium ion binding | MF |
| GO:0005975 | carbohydrate metabolic process | BP |
| GO:0016868 | intramolecular transferase activity, phosphotransferases | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed