General information for g16932.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Protein krueppel.
Parent gene
- The parent gene g16932 is located on chr_4: 11784915..11791751 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16932 | g16932.t1 | TSS | g16932.t1 | 11784560 | 11784560 |
| chr_4 | g16932 | g16932.t1 | isoform | g16932.t1 | 11784915 | 11791751 |
| chr_4 | g16932 | g16932.t1 | exon | g16932.t1.exon1 | 11784915 | 11784954 |
| chr_4 | g16932 | g16932.t1 | cds | g16932.t1.CDS1 | 11784915 | 11784954 |
| chr_4 | g16932 | g16932.t1 | exon | g16932.t1.exon2 | 11790084 | 11790683 |
| chr_4 | g16932 | g16932.t1 | cds | g16932.t1.CDS2 | 11790084 | 11790683 |
| chr_4 | g16932 | g16932.t1 | exon | g16932.t1.exon3 | 11790739 | 11790822 |
| chr_4 | g16932 | g16932.t1 | cds | g16932.t1.CDS3 | 11790739 | 11790822 |
| chr_4 | g16932 | g16932.t1 | exon | g16932.t1.exon4 | 11791180 | 11791751 |
| chr_4 | g16932 | g16932.t1 | cds | g16932.t1.CDS4 | 11791180 | 11791751 |
| chr_4 | g16932 | g16932.t1 | TTS | g16932.t1 | NA | NA |
Sequences
>g16932.t1 Gene=g16932 Length=1296
ATGACTTCATCATTACTGCAGAGTGCACAGAAAAATATGGATTTGGACGAAAGAATTGTA
ACTCCACCAAAGCAACTTTCATCAGCATTAAAAACAGAACCATCAGAAGAGCAGCAAACA
AATCTTTATGCCTGCTTTAATCCATCAGCTCTTTCATTATTTGCAAATCAAACAGCTGCT
GCTGCTGCTCTTATGGCAACATGGCCAATTCAACTTCGTGCTCAGTTAGCATCAACAATA
GGTCTTCCACCACACACACCATTTTTTCCACCTGGTTGGCCTATGACTCCACCATTATCT
CATAAAAGTGGAAATTCACCACCACCACCAACTTCACCAATTTCACCAAAGACAAAATTT
TTAAATAACAACAACAGCAGCACTTTTAATAACAATCACATTGTGTCAACAACAACTGCC
GATTTGCTCAAGAAAAAGAAAAGAAAAGCAACAACAGAAGAAGCAACAGTTCCAGGTTCA
ATTTCACCACCAACTTCAAGTTCATCACCAGGTTCAATTGATACAACAACAGCATTAACA
ACACGTGATCCATCAAAAGATAAAGTTTTTACTTGTAAAATTTGCAATCGTTCATTTGGT
TATAAACATGTACTACAAAATCATGAACGAACTCATACTGGTGAGAAGCCATTTGAATGC
ACTGAATGTCATAAGCGTTTCACTCGTGATCATCATTTGAAAACACACATGCGCTTGCAT
ACTGGTGAAAAGCCATACAGTTGCAGTCATTGTGATCGACAGTTTGTACAAGTTGCGAAT
CTTAGAAGACATCTTCGAGTCCACACGGGTGAGCGTCCATACAATTGTGAGCTCTGTCAG
TCGAAATTTAGTGACAGCAATCAATTAAAAGCTCACATGCTCATCCATAATGATGAAAAA
CCTTTTGAATGTGAAAAATGCAATGGAAAATTCAGAAGAAGACATCATTTAATGCATCAC
AAATGTGGTGATCAAAAATCAATTCATTCAGTTGAAAGTGATGAATCAATGAGGTATTTG
GATGTGCCAATGAATTTGAGTGCAACTGATGGAAAATTAATGAGCAATTTTATGAAAAAA
TTCAATGAAAGTCAAGTCAAAACAATGCTGCAAGTGCCGCAAATTAATTTCATTCAAACT
GACTTGCCTGAACAGACTGAACCAGAAGATTTGAGCATGCATTCACCAAAGTCACCGGTT
TCAATGGATGAACTTGAAGAATTGGAAGATGCAGCTACACTTTATGCAAAATTGCAATGT
AAGAAAAAACGAGTAGGAATCGATGAGAATGTGTAA
>g16932.t1 Gene=g16932 Length=431
MTSSLLQSAQKNMDLDERIVTPPKQLSSALKTEPSEEQQTNLYACFNPSALSLFANQTAA
AAALMATWPIQLRAQLASTIGLPPHTPFFPPGWPMTPPLSHKSGNSPPPPTSPISPKTKF
LNNNNSSTFNNNHIVSTTTADLLKKKKRKATTEEATVPGSISPPTSSSSPGSIDTTTALT
TRDPSKDKVFTCKICNRSFGYKHVLQNHERTHTGEKPFECTECHKRFTRDHHLKTHMRLH
TGEKPYSCSHCDRQFVQVANLRRHLRVHTGERPYNCELCQSKFSDSNQLKAHMLIHNDEK
PFECEKCNGKFRRRHHLMHHKCGDQKSIHSVESDESMRYLDVPMNLSATDGKLMSNFMKK
FNESQVKTMLQVPQINFIQTDLPEQTEPEDLSMHSPKSPVSMDELEELEDAATLYAKLQC
KKKRVGIDENV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 11 | g16932.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 181 | 215 | 1.8E-11 |
| 13 | g16932.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 216 | 240 | 8.1E-16 |
| 12 | g16932.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 241 | 267 | 1.3E-15 |
| 10 | g16932.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 268 | 321 | 1.2E-16 |
| 24 | g16932.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 34 | - |
| 25 | g16932.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 145 | 180 | - |
| 23 | g16932.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 155 | 180 | - |
| 5 | g16932.t1 | PANTHER | PTHR24390:SF151 | PROTEIN KRUEPPEL | 53 | 334 | 4.3E-95 |
| 6 | g16932.t1 | PANTHER | PTHR24390 | ZINC FINGER PROTEIN | 53 | 334 | 4.3E-95 |
| 2 | g16932.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 190 | 212 | 0.0039 |
| 3 | g16932.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 218 | 240 | 0.002 |
| 4 | g16932.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 246 | 268 | 2.3E-4 |
| 1 | g16932.t1 | Pfam | PF12874 | Zinc-finger of C2H2 type | 274 | 293 | 0.0017 |
| 14 | g16932.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 192 | 212 | - |
| 16 | g16932.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 220 | 240 | - |
| 15 | g16932.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 248 | 268 | - |
| 17 | g16932.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 276 | 296 | - |
| 27 | g16932.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 190 | 217 | 15.895 |
| 30 | g16932.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 218 | 245 | 17.142 |
| 26 | g16932.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 246 | 273 | 16.83 |
| 29 | g16932.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 274 | 301 | 13.464 |
| 28 | g16932.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 302 | 334 | 10.097 |
| 18 | g16932.t1 | SMART | SM00355 | c2h2final6 | 190 | 212 | 0.0055 |
| 20 | g16932.t1 | SMART | SM00355 | c2h2final6 | 218 | 240 | 0.043 |
| 21 | g16932.t1 | SMART | SM00355 | c2h2final6 | 246 | 268 | 2.7E-4 |
| 19 | g16932.t1 | SMART | SM00355 | c2h2final6 | 274 | 296 | 0.0034 |
| 22 | g16932.t1 | SMART | SM00355 | c2h2final6 | 302 | 329 | 100.0 |
| 7 | g16932.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 188 | 240 | 1.64E-15 |
| 8 | g16932.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 227 | 283 | 1.33E-19 |
| 9 | g16932.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 268 | 320 | 2.2E-14 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific | MF |
KEGG
Orthology
- This transcript has been annotated with K09231 (krueppel)
Pathway
This gene does not belong to any pathways.
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed