General information for g16937.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Luciferin sulfotransferase.
Parent gene
- The parent gene g16937 is located on chr_4: 11821367..11823236 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16937 | g16937.t1 | isoform | g16937.t1 | 11821367 | 11823236 |
| chr_4 | g16937 | g16937.t1 | exon | g16937.t1.exon1 | 11821367 | 11821485 |
| chr_4 | g16937 | g16937.t1 | cds | g16937.t1.CDS1 | 11821367 | 11821485 |
| chr_4 | g16937 | g16937.t1 | exon | g16937.t1.exon2 | 11822426 | 11822868 |
| chr_4 | g16937 | g16937.t1 | cds | g16937.t1.CDS2 | 11822426 | 11822868 |
| chr_4 | g16937 | g16937.t1 | exon | g16937.t1.exon3 | 11822929 | 11823236 |
| chr_4 | g16937 | g16937.t1 | cds | g16937.t1.CDS3 | 11822929 | 11823236 |
| chr_4 | g16937 | g16937.t1 | TSS | g16937.t1 | 11823313 | 11823313 |
| chr_4 | g16937 | g16937.t1 | TTS | g16937.t1 | NA | NA |
Sequences
>g16937.t1 Gene=g16937 Length=870
ATGAGTTTTATCGAAGTTAGCACAATAAAACGTGATATTTCACGTCATGAACTTTTTTCA
ACTTTTGTCTCAGTGAAGTCGTTAGAAGAAAAATGGGAAAGTTTTCCGCCTTGTGTTTTA
ATTAAAGAAACAGTTCCAAATTTGAGAAATATAAGAAATTTCAAAGTTCATTCTGATGAC
GTCTTTTTATGCGGATATCCAAGAAGTGGAGCGACAATAATACAAGAGATTATTTGGCTT
ATTTTAAATGATTTTGATTTTGAGAAAGCAAAAAATGTTTTGGCTGATGAACGTTTTCCA
ATACTTGAAAGTCTAAAAGACACAAATATTTTTCATGATGGAAAAGTCATAATTTACACT
GATGAACTTCATCGACCAAGAACAATCAAAACTCATCTTCCAGTTCAATTTCTTCCTGAT
GACATTTATGTTAAAAAACCAAAAATAATTTACTTAAAACGAAATGTCAAAGATGTCGCA
ATTTCTGCTTATCATCATATTGTTGATGACTTGCATAGTTACACAAAATTACAAGAATTT
TTGCAAGACTTTCTTGATGATAAAATTGTTTATACGCCGTACAGAGAACATCTTGTAAAT
TTTGAAAACATTCCTAATTATGAGAATATTTTAGAAATTGAATACGAATGGATGATGGAA
AATATTGATGGAACTATTAAAAAAGTTGCTGAATTTTTAGGGAAAGAAATTAATGAGACA
AATTTTGAAATTTTAAAAAATTTCATTGAAGAAAGCAACAAAGTAAGACAATTAAAAACA
AAAAGATGTGAAATGCCACCAGAATTTTTGGAAAAATTCGAAAATTTTATTAAAAATGCT
GCAGATGTAAAATCTGAATTTAGTAAATAA
>g16937.t1 Gene=g16937 Length=289
MSFIEVSTIKRDISRHELFSTFVSVKSLEEKWESFPPCVLIKETVPNLRNIRNFKVHSDD
VFLCGYPRSGATIIQEIIWLILNDFDFEKAKNVLADERFPILESLKDTNIFHDGKVIIYT
DELHRPRTIKTHLPVQFLPDDIYVKKPKIIYLKRNVKDVAISAYHHIVDDLHSYTKLQEF
LQDFLDDKIVYTPYREHLVNFENIPNYENILEIEYEWMMENIDGTIKKVAEFLGKEINET
NFEILKNFIEESNKVRQLKTKRCEMPPEFLEKFENFIKNAADVKSEFSK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g16937.t1 | Gene3D | G3DSA:3.40.50.300 | - | 5 | 287 | 0 |
| 2 | g16937.t1 | PANTHER | PTHR11783 | SULFOTRANSFERASE SULT | 37 | 249 | 0 |
| 3 | g16937.t1 | PANTHER | PTHR11783:SF180 | GH11818P-RELATED | 37 | 249 | 0 |
| 1 | g16937.t1 | Pfam | PF00685 | Sulfotransferase domain | 59 | 259 | 0 |
| 4 | g16937.t1 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 34 | 277 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008146 | sulfotransferase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
