General information for g16958.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Cytosolic purine 5’-nucleotidase.
Parent gene
- The parent gene g16958 is located on chr_4: 11876297..11877993 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16958 | g16958.t1 | TTS | g16958.t1 | 11868418 | 11868418 |
| chr_4 | g16958 | g16958.t1 | isoform | g16958.t1 | 11869242 | 11874700 |
| chr_4 | g16958 | g16958.t1 | exon | g16958.t1.exon1 | 11869242 | 11869379 |
| chr_4 | g16958 | g16958.t1 | cds | g16958.t1.CDS1 | 11869242 | 11869379 |
| chr_4 | g16958 | g16958.t1 | exon | g16958.t1.exon2 | 11869434 | 11869650 |
| chr_4 | g16958 | g16958.t1 | cds | g16958.t1.CDS2 | 11869434 | 11869650 |
| chr_4 | g16958 | g16958.t1 | exon | g16958.t1.exon3 | 11869975 | 11870100 |
| chr_4 | g16958 | g16958.t1 | cds | g16958.t1.CDS3 | 11869975 | 11870100 |
| chr_4 | g16958 | g16958.t1 | exon | g16958.t1.exon4 | 11870175 | 11870359 |
| chr_4 | g16958 | g16958.t1 | cds | g16958.t1.CDS4 | 11870175 | 11870359 |
| chr_4 | g16958 | g16958.t1 | exon | g16958.t1.exon5 | 11870472 | 11870603 |
| chr_4 | g16958 | g16958.t1 | cds | g16958.t1.CDS5 | 11870472 | 11870603 |
| chr_4 | g16958 | g16958.t1 | exon | g16958.t1.exon6 | 11870666 | 11871264 |
| chr_4 | g16958 | g16958.t1 | cds | g16958.t1.CDS6 | 11870666 | 11871264 |
| chr_4 | g16958 | g16958.t1 | exon | g16958.t1.exon7 | 11871572 | 11871777 |
| chr_4 | g16958 | g16958.t1 | cds | g16958.t1.CDS7 | 11871572 | 11871777 |
| chr_4 | g16958 | g16958.t1 | exon | g16958.t1.exon8 | 11874570 | 11874700 |
| chr_4 | g16958 | g16958.t1 | cds | g16958.t1.CDS8 | 11874570 | 11874700 |
| chr_4 | g16958 | g16958.t1 | TSS | g16958.t1 | 11874802 | 11874802 |
Sequences
>g16958.t1 Gene=g16958 Length=1734
ATGTCTTTGATTAAAAACAGCAACAAAAGTGACAATAACACAAATTTAAACAATGAAAGT
GTAAATTATAATCATTGCAATGGAAATCCAGCTTATGAATTGAGTCATTCAAAGCGTGAA
ACTGACAAAAGAATATTTGTAAATCGTTCTTTGCATTTGGAAAAAATAAAGTACATAGGA
ATGGATCTTGATTATACAATTGCTGAATATAATTCACCACAATATGAAACACTTGGATTT
GATTTAATTAAAGAACGACTTGTTACAGTCGGTTATCCAGAGGAAATTTTAGAATTTCAA
TATGATCAGAGTTTTCCTATTCGTGGATTGTGGTTTGATACTCTTTATGGAAATTTATTA
AAAGTTGACGCCTATGGCAATATACTTGTCTGTGTACATGGTTTCACTTTTCTAAAACCG
CAAGCAATTTACGATTTGTATCCAAACAAGTTCCTACAACTTGATGAATCACGAGTTTAC
GTTCTCAATACACTTTTCAATCTTCCTGAAACTTATTTACTCGCATGTCTTGTTGACTTT
TTCACAAATTCTCCACAATACCAAAGTGAACGTACTGGAGTAAAAATTGGTGAACTTTTC
ATGTCTTTCCGTTCAATTTTTCAAGATGTTCGTGGCGCTGTTGATTTTGTGCATTTACAT
GGCGATCTCAAGTCAAAAACTGTTGAAAATCTCGATTATTATGTTAAAAAAGATTCACGT
CTGCCATTGCTTTTAAATCGCATTCGTGGTTCAGGAATTAAAACTTTTTTGCTTACCAAT
AGTGACTACAATTTCACCAATAAAATTATGACCTATCTTTTTGATTTTAATGAACGACCT
GTTGGACTGAGTGATAATTTAAAAGATCACAAAAATTGGCGATCGTACTTTGATGTGATT
GTTGTTGATGCTAGAAAGCCTTTGTTCTTTGGTGAAGGAACAATTTTGAGACAAGTTGAT
TTAAAAACTGAAAAATTAAAAGTTGGAACATACTTGGGCAGCTTACAAGAAGATCAAATT
TATTCTGGTGGCAGTTGTGAAGTTTTTACTTCATTGCTTGGCGCAAAGGGTAAAGACGTT
CTCTATATTGGTGACCATATTTTTGGTGACATTCTTAAGAGTAAGAAAAAGCGTGGTTGG
AGAACATTTTTAGTTGTTCCAGAATTACAAGATGAATTGCGTGTATGGACTGAAAAACGT
CAGTTGTTCCATGATCTTCAACAACTTGACATTAAATTAGGTGAAATTTATAAAAATCTT
GACTCGAGTACCAAAGAAAAGCCTGATATTTCTGCCTTAAGAAATCACGTACGTGAAGTT
ACACATCAAATGGACATGAATTATGGAATGATGGGAAGCCTTTTTAGATCTGGATCAAGA
CAAACATTTTTTGCATGGCAAGTGACTCGATATGCGGACATTTATGCAGCAACTTTCTTG
AATCTTCAGTTTTATCCATTCAGTTACATGTTTCGTGCACCAGCAATGCTTTTACCACAT
GAAAGTACAGTTGAGCATCAGCAAAAGTTTAAAAGTGAAGAAAATCATGTACCATTTAAA
GCGACAAGACAATTCAGTCATCATGATTCACTAAAGCCGACAACTGATCATCTTGTAAAT
GCACGACCTCCAACTCCACAAAGTGTAACTCACTATCACGATGAGGATGGCGACGATGAT
GACTCGGATGATAAGAAATCAGATAAACCTGTCTCAGATGAAGACCAAATATAA
>g16958.t1 Gene=g16958 Length=577
MSLIKNSNKSDNNTNLNNESVNYNHCNGNPAYELSHSKRETDKRIFVNRSLHLEKIKYIG
MDLDYTIAEYNSPQYETLGFDLIKERLVTVGYPEEILEFQYDQSFPIRGLWFDTLYGNLL
KVDAYGNILVCVHGFTFLKPQAIYDLYPNKFLQLDESRVYVLNTLFNLPETYLLACLVDF
FTNSPQYQSERTGVKIGELFMSFRSIFQDVRGAVDFVHLHGDLKSKTVENLDYYVKKDSR
LPLLLNRIRGSGIKTFLLTNSDYNFTNKIMTYLFDFNERPVGLSDNLKDHKNWRSYFDVI
VVDARKPLFFGEGTILRQVDLKTEKLKVGTYLGSLQEDQIYSGGSCEVFTSLLGAKGKDV
LYIGDHIFGDILKSKKKRGWRTFLVVPELQDELRVWTEKRQLFHDLQQLDIKLGEIYKNL
DSSTKEKPDISALRNHVREVTHQMDMNYGMMGSLFRSGSRQTFFAWQVTRYADIYAATFL
NLQFYPFSYMFRAPAMLLPHESTVEHQQKFKSEENHVPFKATRQFSHHDSLKPTTDHLVN
ARPPTPQSVTHYHDEDGDDDDSDDKKSDKPVSDEDQI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g16958.t1 | CDD | cd07522 | HAD_cN-II | 46 | 477 | 4.0494E-159 |
| 6 | g16958.t1 | Gene3D | G3DSA:3.40.50.1000 | - | 40 | 88 | 4.1E-7 |
| 5 | g16958.t1 | Gene3D | G3DSA:3.40.50.1000 | - | 221 | 412 | 3.2E-54 |
| 9 | g16958.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 536 | 577 | - |
| 10 | g16958.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 563 | 577 | - |
| 2 | g16958.t1 | PANTHER | PTHR12103:SF17 | CYTOSOLIC PURINE 5’-NUCLEOTIDASE | 33 | 525 | 1.9E-224 |
| 3 | g16958.t1 | PANTHER | PTHR12103 | 5’-NUCLEOTIDASE DOMAIN-CONTAINING | 33 | 525 | 1.9E-224 |
| 7 | g16958.t1 | PIRSF | PIRSF017434 | NT5C2 | 25 | 528 | 5.7E-182 |
| 1 | g16958.t1 | Pfam | PF05761 | 5’ nucleotidase family | 45 | 502 | 2.3E-167 |
| 4 | g16958.t1 | SUPERFAMILY | SSF56784 | HAD-like | 43 | 503 | 1.02E-148 |
| 11 | g16958.t1 | TIGRFAM | TIGR02244 | HAD-IG-Ncltidse: HAD superfamily (subfamily IG) hydrolase, 5’-nucleotidase | 45 | 405 | 2.7E-121 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K01081 (5’-nucleotidase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
