Gene loci information

Transcript annotation

  • This transcript has been annotated as Cytosolic purine 5’-nucleotidase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g16958 g16958.t5 TTS g16958.t5 11868418 11868418
chr_4 g16958 g16958.t5 isoform g16958.t5 11869242 11874700
chr_4 g16958 g16958.t5 exon g16958.t5.exon1 11869242 11869379
chr_4 g16958 g16958.t5 cds g16958.t5.CDS1 11869242 11869379
chr_4 g16958 g16958.t5 exon g16958.t5.exon2 11871071 11871264
chr_4 g16958 g16958.t5 cds g16958.t5.CDS2 11871071 11871264
chr_4 g16958 g16958.t5 exon g16958.t5.exon3 11871572 11871777
chr_4 g16958 g16958.t5 cds g16958.t5.CDS3 11871572 11871777
chr_4 g16958 g16958.t5 exon g16958.t5.exon4 11874570 11874700
chr_4 g16958 g16958.t5 cds g16958.t5.CDS4 11874570 11874700
chr_4 g16958 g16958.t5 TSS g16958.t5 11874802 11874802

Sequences

>g16958.t5 Gene=g16958 Length=669
ATGTCTTTGATTAAAAACAGCAACAAAAGTGACAATAACACAAATTTAAACAATGAAAGT
GTAAATTATAATCATTGCAATGGAAATCCAGCTTATGAATTGAGTCATTCAAAGCGTGAA
ACTGACAAAAGAATATTTGTAAATCGTTCTTTGCATTTGGAAAAAATAAAGTACATAGGA
ATGGATCTTGATTATACAATTGCTGAATATAATTCACCACAATATGAAACACTTGGATTT
GATTTAATTAAAGAACGACTTGTTACAGTCGGTTATCCAGAGGAAATTTTAGAATTTCAA
TATGATCAGAGTTTTCCTATTCGTGGATTGTGGTTTGATACTCTTTATGGAAATTTATTA
AAAGTTGACGCCTATGGCAATATACTTGTCTGTGTACATGGTTTCACTTTTCTAAAACCG
CAAGCAATTTACGATTTGTATCCAAACAAGTTCCTACAACTTGATGAATCACGAGTTTAC
GTTCTCAATACACTTTTCAATCTTCCTGAAACTTATTTACTCGCATGTCTTCCGACAACT
GATCATCTTGTAAATGCACGACCTCCAACTCCACAAAGTGTAACTCACTATCACGATGAG
GATGGCGACGATGATGACTCGGATGATAAGAAATCAGATAAACCTGTCTCAGATGAAGAC
CAAATATAA

>g16958.t5 Gene=g16958 Length=222
MSLIKNSNKSDNNTNLNNESVNYNHCNGNPAYELSHSKRETDKRIFVNRSLHLEKIKYIG
MDLDYTIAEYNSPQYETLGFDLIKERLVTVGYPEEILEFQYDQSFPIRGLWFDTLYGNLL
KVDAYGNILVCVHGFTFLKPQAIYDLYPNKFLQLDESRVYVLNTLFNLPETYLLACLPTT
DHLVNARPPTPQSVTHYHDEDGDDDDSDDKKSDKPVSDEDQI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g16958.t5 Gene3D G3DSA:3.40.50.1000 - 40 88 1.1E-7
6 g16958.t5 MobiDBLite mobidb-lite consensus disorder prediction 189 222 -
5 g16958.t5 MobiDBLite mobidb-lite consensus disorder prediction 208 222 -
2 g16958.t5 PANTHER PTHR12103:SF17 CYTOSOLIC PURINE 5’-NUCLEOTIDASE 33 178 9.7E-66
3 g16958.t5 PANTHER PTHR12103 5’-NUCLEOTIDASE DOMAIN-CONTAINING 33 178 9.7E-66
1 g16958.t5 Pfam PF05761 5’ nucleotidase family 45 178 4.9E-54
4 g16958.t5 SUPERFAMILY SSF56784 HAD-like 43 177 5.03E-49

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed