General information for g1696.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Probable cytochrome P450 9f2.
Parent gene
- The parent gene g1696 is located on chr_3: 12590821..12591576 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1696 | g1696.t2 | TTS | g1696.t2 | 12590765 | 12590765 |
| chr_3 | g1696 | g1696.t2 | isoform | g1696.t2 | 12590821 | 12591576 |
| chr_3 | g1696 | g1696.t2 | exon | g1696.t2.exon1 | 12590821 | 12591228 |
| chr_3 | g1696 | g1696.t2 | cds | g1696.t2.CDS1 | 12591096 | 12591228 |
| chr_3 | g1696 | g1696.t2 | exon | g1696.t2.exon2 | 12591290 | 12591576 |
| chr_3 | g1696 | g1696.t2 | cds | g1696.t2.CDS2 | 12591290 | 12591576 |
| chr_3 | g1696 | g1696.t2 | TSS | g1696.t2 | 12592494 | 12592494 |
Sequences
>g1696.t2 Gene=g1696 Length=695
ATGGGCTTCATGGGATATGAATTAGCATGCAATCCTGATGTTCAACAAAAACTTTATGAA
GAAATTTTAGCTATGGAAGAAGATTTAAATGGCAAAACATTAACTTATGAGAAGTTACAA
AGCATGAAATATATGGATCAAGTGGTGTGTGAAGTCTTAAGAAAATGGCCGCCAGCTCCT
GTTACAGATCGCACTTGCGTGAAAGATTATGAACTAGAAGTTGATGGAGTGAAATTTACT
ATTGAGAAAGGAGATAATTGTATGATTCCTATTTGGGGAATGCATCATGATATAGCTTAC
TTTCCAAATCCTGAAAAATTCGATCCCGAGCGTTTTAGTGATGAAAATAAAGATAAGATT
GAAGAGTACACATATTTGCCATTCGGTGTTGGTAAGTTTTTTTTAAACTTAAGTTTTTAA
AGTTATACTAAAATAATAATTTTTTCTTTATAAATTTTACATAGGTCCAAGGTATGTATT
CTTATAATTTTAAAATGTTTTCTATCTTAATTTTTTATAGAAATTGCATTGGAAGTCGTT
TTGCATTGATGGAAGTCAAATCAATTTTCTATTACATGCTTTTGAATTTTAAAATCATGA
AAACTGAGAAAACACCAATTCCACTTGAATTTGTAAAAGTGCCTGTAGGACTTAAAGTAG
AAAAAGGAATCTGGGTGGCTCTTGAACCACGATAA
>g1696.t2 Gene=g1696 Length=139
MGFMGYELACNPDVQQKLYEEILAMEEDLNGKTLTYEKLQSMKYMDQVVCEVLRKWPPAP
VTDRTCVKDYELEVDGVKFTIEKGDNCMIPIWGMHHDIAYFPNPEKFDPERFSDENKDKI
EEYTYLPFGVGKFFLNLSF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g1696.t2 | Gene3D | G3DSA:1.10.630.10 | Cytochrome p450 | 1 | 133 | 0 |
| 2 | g1696.t2 | PANTHER | PTHR24292 | CYTOCHROME P450 | 2 | 131 | 0 |
| 3 | g1696.t2 | PANTHER | PTHR24292:SF90 | CYTOCHROME P450 317A1-RELATED | 2 | 131 | 0 |
| 6 | g1696.t2 | PRINTS | PR00463 | E-class P450 group I signature | 1 | 22 | 0 |
| 5 | g1696.t2 | PRINTS | PR00463 | E-class P450 group I signature | 90 | 114 | 0 |
| 4 | g1696.t2 | PRINTS | PR00463 | E-class P450 group I signature | 125 | 135 | 0 |
| 1 | g1696.t2 | Pfam | PF00067 | Cytochrome P450 | 6 | 132 | 0 |
| 7 | g1696.t2 | SUPERFAMILY | SSF48264 | Cytochrome P450 | 2 | 132 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0020037 | heme binding | MF |
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | MF |
| GO:0005506 | iron ion binding | MF |
| GO:0055114 | NA | NA |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
