General information for g16999.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Solute carrier family 26 member 6.
Parent gene
- The parent gene g16999 is located on chr_4: 12001435..12003913 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16999 | g16999.t1 | TSS | g16999.t1 | 12000792 | 12000792 |
| chr_4 | g16999 | g16999.t1 | isoform | g16999.t1 | 12000836 | 12003668 |
| chr_4 | g16999 | g16999.t1 | exon | g16999.t1.exon1 | 12000836 | 12000977 |
| chr_4 | g16999 | g16999.t1 | cds | g16999.t1.CDS1 | 12000836 | 12000977 |
| chr_4 | g16999 | g16999.t1 | exon | g16999.t1.exon2 | 12001435 | 12001938 |
| chr_4 | g16999 | g16999.t1 | cds | g16999.t1.CDS2 | 12001435 | 12001938 |
| chr_4 | g16999 | g16999.t1 | exon | g16999.t1.exon3 | 12001990 | 12002613 |
| chr_4 | g16999 | g16999.t1 | cds | g16999.t1.CDS3 | 12001990 | 12002613 |
| chr_4 | g16999 | g16999.t1 | exon | g16999.t1.exon4 | 12002959 | 12003668 |
| chr_4 | g16999 | g16999.t1 | cds | g16999.t1.CDS4 | 12002959 | 12003668 |
| chr_4 | g16999 | g16999.t1 | TTS | g16999.t1 | 12003890 | 12003890 |
Sequences
>g16999.t1 Gene=g16999 Length=1980
ATGAATGACAAAGATATACACATAAGTTTGACTGAAAATGGCACAAACATTAAACATTCA
ATTCCTTATGAAATTACGAGAAAAGTAATGAAAAGTGAAGAACTTGAAAAATTTACTGGA
TTTGAAGGGCACAAAAATTCTTTTTTTCAATCAATAAAATCGTCAATAGAATCAATCAAA
TTCAAAACTTTAATTTTTAATCTCATTCCAATTCTCGACTGGCTTCCAAAATATAAAATA
AAAAGTTTTCTCATTGGTGACGTAATTGCTGGTATAACAGTTTCAATTCTTGCAATTCCT
CAAGGAATGGCGTATGGCTTACTAGCTGGTCTAGATCCAGTTGCTGGTCTTTATATGGCA
TTTTTTCCTGTCTTAATTTATTTTATTTTTGGATCATCACGACATGTCAGTGTTGGAACA
TTTGCAATTGTGTCAATTATGACATCAAAAGTTGTTGCAACATATTCTGATCCTAATTAC
GGAACTCCTGAAGCATTTAAAGAAAATAGCTTTAGTAACTATCAAGTAGCAACAGCAGCA
ACATTGGCATGTGGAATTTTTCATTTAGGAATGTTTGTATTACAATTGGGAGTTGTTGCA
TCATTGCTATCTGAAGCATTAGTTAGTGGATTCACAACAGGATCAGCAATTCATGTTGTC
ATCACACAAACAAAAGATTTATTAGGAATTTCATTTCCAAGACACAAAGGAGCATTTAAA
GCAATTTTATCAGTCAAAGACATCATCTTACAAATTCCACATGCAAATCTTTACACCGTC
TATGTATCAGTTTCTTGTATGATTTTTCTAATCATTGTCAATGAAATTTTAAGACCAATT
GTAGCAAAAAAGACAAAATTGCCAATTCCTGCTGAACTTATTGCTGTGATTGTTTACACA
GCTGTTTCATATTTGATGAATTTTAATGAAAATTATAAAATTGATATTGTTGGTAAAATT
CCAACTGGACTTCCAACACCTCAATTTCCATCATTAAATCTTGTCTACATGGTTGCTGTT
GATTCTATAGCTATAACTGTAGTTAGTTATTCAATTGTCGTTAGCATGGGATTGATTTGT
GCCAAAAAAGATAAAACTTATGAAGTTCGACCTAATCAAGAGTTATTAGCTTTGGGTGCT
GCAAATGTTTTTGGTTCTTGCTTTTCTTGTATTCCTTTGGCTTGCGCATTATCAAGGACT
ATGGTATTGTATCAACTTGGTGGAAAAACACAAATTGTTTCAGTCGTTTCAGCTTTGATT
ATTTTAATGTTGCTTCTTTGGATTGGACCACTTTTTGAAACATTACCAAGAGCAATTTTA
GCAGCAATTATTATTGTCGCATTGAAATCTATGCTTTGGCAATTTAAAGACATCAAAAAA
TATTACAAAGAAAGTAAACTTGATGCTCTTGTTTGGCTTGGAACTTTTTGTACTGTTGTG
ATTATTGACATTGACATTGGACTTCTTGTTGGATTTATTTTATCACTTTTTACTCTTTAT
ATGAAAGGATTTAAAAGTTATTCATGCATGCTTGGTCAAGTAACTGGAACAGAAATTTAT
GTCGATTTAAAATCTCATAAAAATATCAAAGAAATTCCAGGTGTTAAAATTTTCAAATAT
TTTGGATCAATCAATTTTGCAACTTGTTCAAATTTTAAGAAAAATCTTTTTGAAAATTTA
AATATTGATTGTCATAAAATCAAAGCAGCATCACATTTTGATGAAAAAGAATTGAATGAT
AGAATGAAAACATTAATTATTGATCTTAGTGCAGTTGCACATCTTGATGTTCGTGGTTAT
CGAATGATTTTGGAAATTAAAAATGAATTAAAAATTATGGATGTCAATGTATTGCTTGCT
TGTGTCAGTGATGTTGTTTATACTTCAATTCAAAGAGCTGTAAACATTGGTGATGGAGAA
ATTGAAATTTTTCCTACAATTCATGATGCTATTTTATTTTCTGAAAAGAAATTTGAATGA
>g16999.t1 Gene=g16999 Length=659
MNDKDIHISLTENGTNIKHSIPYEITRKVMKSEELEKFTGFEGHKNSFFQSIKSSIESIK
FKTLIFNLIPILDWLPKYKIKSFLIGDVIAGITVSILAIPQGMAYGLLAGLDPVAGLYMA
FFPVLIYFIFGSSRHVSVGTFAIVSIMTSKVVATYSDPNYGTPEAFKENSFSNYQVATAA
TLACGIFHLGMFVLQLGVVASLLSEALVSGFTTGSAIHVVITQTKDLLGISFPRHKGAFK
AILSVKDIILQIPHANLYTVYVSVSCMIFLIIVNEILRPIVAKKTKLPIPAELIAVIVYT
AVSYLMNFNENYKIDIVGKIPTGLPTPQFPSLNLVYMVAVDSIAITVVSYSIVVSMGLIC
AKKDKTYEVRPNQELLALGAANVFGSCFSCIPLACALSRTMVLYQLGGKTQIVSVVSALI
ILMLLLWIGPLFETLPRAILAAIIIVALKSMLWQFKDIKKYYKESKLDALVWLGTFCTVV
IIDIDIGLLVGFILSLFTLYMKGFKSYSCMLGQVTGTEIYVDLKSHKNIKEIPGVKIFKY
FGSINFATCSNFKKNLFENLNIDCHKIKAASHFDEKELNDRMKTLIIDLSAVAHLDVRGY
RMILEIKNELKIMDVNVLLACVSDVVYTSIQRAVNIGDGEIEIFPTIHDAILFSEKKFE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 32 | g16999.t1 | CDD | cd07042 | STAS_SulP_like_sulfate_transporter | 526 | 647 | 4.31992E-13 |
| 8 | g16999.t1 | Gene3D | G3DSA:3.30.750.24 | - | 507 | 658 | 8.8E-31 |
| 4 | g16999.t1 | PANTHER | PTHR11814 | SULFATE TRANSPORTER | 18 | 160 | 2.2E-225 |
| 6 | g16999.t1 | PANTHER | PTHR11814:SF189 | FI18412P1 | 18 | 160 | 2.2E-225 |
| 3 | g16999.t1 | PANTHER | PTHR11814 | SULFATE TRANSPORTER | 173 | 655 | 2.2E-225 |
| 5 | g16999.t1 | PANTHER | PTHR11814:SF189 | FI18412P1 | 173 | 655 | 2.2E-225 |
| 1 | g16999.t1 | Pfam | PF00916 | Sulfate permease family | 84 | 474 | 3.6E-106 |
| 2 | g16999.t1 | Pfam | PF01740 | STAS domain | 527 | 650 | 3.4E-18 |
| 20 | g16999.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 79 | - |
| 23 | g16999.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 80 | 99 | - |
| 13 | g16999.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 100 | 105 | - |
| 27 | g16999.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 106 | 130 | - |
| 19 | g16999.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 131 | 135 | - |
| 30 | g16999.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 136 | 155 | - |
| 12 | g16999.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 156 | 175 | - |
| 22 | g16999.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 176 | 203 | - |
| 18 | g16999.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 204 | 257 | - |
| 26 | g16999.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 258 | 277 | - |
| 11 | g16999.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 278 | 288 | - |
| 21 | g16999.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 289 | 306 | - |
| 17 | g16999.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 307 | 333 | - |
| 29 | g16999.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 334 | 354 | - |
| 10 | g16999.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 355 | 374 | - |
| 24 | g16999.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 375 | 399 | - |
| 15 | g16999.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 400 | 410 | - |
| 28 | g16999.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 411 | 431 | - |
| 14 | g16999.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 432 | 437 | - |
| 31 | g16999.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 438 | 455 | - |
| 16 | g16999.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 456 | 469 | - |
| 25 | g16999.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 470 | 500 | - |
| 9 | g16999.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 501 | 659 | - |
| 45 | g16999.t1 | ProSiteProfiles | PS50801 | STAS domain profile. | 525 | 654 | 20.918 |
| 7 | g16999.t1 | SUPERFAMILY | SSF52091 | SpoIIaa-like | 528 | 650 | 7.26E-13 |
| 46 | g16999.t1 | TIGRFAM | TIGR00815 | sulP: sulfate permease | 70 | 650 | 3.9E-139 |
| 37 | g16999.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 82 | 104 | - |
| 34 | g16999.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 114 | 131 | - |
| 35 | g16999.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 138 | 156 | - |
| 38 | g16999.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 171 | 193 | - |
| 40 | g16999.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 200 | 222 | - |
| 41 | g16999.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 255 | 277 | - |
| 33 | g16999.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 289 | 308 | - |
| 36 | g16999.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 332 | 354 | - |
| 44 | g16999.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 375 | 397 | - |
| 39 | g16999.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 412 | 431 | - |
| 43 | g16999.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 438 | 455 | - |
| 42 | g16999.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 470 | 492 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016020 | membrane | CC |
| GO:0055085 | transmembrane transport | BP |
| GO:0015116 | sulfate transmembrane transporter activity | MF |
| GO:0008272 | sulfate transport | BP |
| GO:0016021 | integral component of membrane | CC |
| GO:0008271 | secondary active sulfate transmembrane transporter activity | MF |
KEGG
Orthology
- This transcript has been annotated with K14704 (solute carrier family 26 (sulfate anion transporter), member 6)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed