Gene loci information

Transcript annotation

  • This transcript has been annotated as Solute carrier family 26 member 6.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g16999 g16999.t4 TSS g16999.t4 12000792 12000792
chr_4 g16999 g16999.t4 isoform g16999.t4 12001435 12003913
chr_4 g16999 g16999.t4 exon g16999.t4.exon1 12001435 12001938
chr_4 g16999 g16999.t4 cds g16999.t4.CDS1 12001599 12001938
chr_4 g16999 g16999.t4 exon g16999.t4.exon2 12001990 12002613
chr_4 g16999 g16999.t4 cds g16999.t4.CDS2 12001990 12002613
chr_4 g16999 g16999.t4 exon g16999.t4.exon3 12002959 12003673
chr_4 g16999 g16999.t4 cds g16999.t4.CDS3 12002959 12003668
chr_4 g16999 g16999.t4 exon g16999.t4.exon4 12003734 12003913
chr_4 g16999 g16999.t4 TTS g16999.t4 12003890 12003890

Sequences

>g16999.t4 Gene=g16999 Length=2023
TTTTTCAATCAATAAAATCGTCAATAGAATCAATCAAATTCAAAACTTTAATTTTTAATC
TCATTCCAATTCTCGACTGGCTTCCAAAATATAAAATAAAAAGTTTTCTCATTGGTGACG
TAATTGCTGGTATAACAGTTTCAATTCTTGCAATTCCTCAAGGAATGGCGTATGGCTTAC
TAGCTGGTCTAGATCCAGTTGCTGGTCTTTATATGGCATTTTTTCCTGTCTTAATTTATT
TTATTTTTGGATCATCACGACATGTCAGTGTTGGAACATTTGCAATTGTGTCAATTATGA
CATCAAAAGTTGTTGCAACATATTCTGATCCTAATTACGGAACTCCTGAAGCATTTAAAG
AAAATAGCTTTAGTAACTATCAAGTAGCAACAGCAGCAACATTGGCATGTGGAATTTTTC
ATTTAGGAATGTTTGTATTACAATTGGGAGTTGTTGCATCATTGCTATCTGAAGCATTAG
TTAGTGGATTCACAACAGGATCAGCAATTCATGTTGTCATCACACAAACAAAAGATTTAT
TAGGAATTTCATTTCCAAGACACAAAGGAGCATTTAAAGCAATTTTATCAGTCAAAGACA
TCATCTTACAAATTCCACATGCAAATCTTTACACCGTCTATGTATCAGTTTCTTGTATGA
TTTTTCTAATCATTGTCAATGAAATTTTAAGACCAATTGTAGCAAAAAAGACAAAATTGC
CAATTCCTGCTGAACTTATTGCTGTGATTGTTTACACAGCTGTTTCATATTTGATGAATT
TTAATGAAAATTATAAAATTGATATTGTTGGTAAAATTCCAACTGGACTTCCAACACCTC
AATTTCCATCATTAAATCTTGTCTACATGGTTGCTGTTGATTCTATAGCTATAACTGTAG
TTAGTTATTCAATTGTCGTTAGCATGGGATTGATTTGTGCCAAAAAAGATAAAACTTATG
AAGTTCGACCTAATCAAGAGTTATTAGCTTTGGGTGCTGCAAATGTTTTTGGTTCTTGCT
TTTCTTGTATTCCTTTGGCTTGCGCATTATCAAGGACTATGGTATTGTATCAACTTGGTG
GAAAAACACAAATTGTTTCAGTCGTTTCAGCTTTGATTATTTTAATGTTGCTTCTTTGGA
TTGGACCACTTTTTGAAACATTACCAAGAGCAATTTTAGCAGCAATTATTATTGTCGCAT
TGAAATCTATGCTTTGGCAATTTAAAGACATCAAAAAATATTACAAAGAAAGTAAACTTG
ATGCTCTTGTTTGGCTTGGAACTTTTTGTACTGTTGTGATTATTGACATTGACATTGGAC
TTCTTGTTGGATTTATTTTATCACTTTTTACTCTTTATATGAAAGGATTTAAAAGTTATT
CATGCATGCTTGGTCAAGTAACTGGAACAGAAATTTATGTCGATTTAAAATCTCATAAAA
ATATCAAAGAAATTCCAGGTGTTAAAATTTTCAAATATTTTGGATCAATCAATTTTGCAA
CTTGTTCAAATTTTAAGAAAAATCTTTTTGAAAATTTAAATATTGATTGTCATAAAATCA
AAGCAGCATCACATTTTGATGAAAAAGAATTGAATGATAGAATGAAAACATTAATTATTG
ATCTTAGTGCAGTTGCACATCTTGATGTTCGTGGTTATCGAATGATTTTGGAAATTAAAA
ATGAATTAAAAATTATGGATGTCAATGTATTGCTTGCTTGTGTCAGTGATGTTGTTTATA
CTTCAATTCAAAGAGCTGTAAACATTGGTGATGGAGAAATTGAAATTTTTCCTACAATTC
ATGATGCTATTTTATTTTCTGAAAAGAAATTTGAATGAATTTGATTTCATTTTTCTCTTT
TTTGTTAAATGAACTTTTAAATTATGAAATAACAATGCTTTAGCACTAATAAAGCTTGAA
CCACAATAACATTTGAAATTTAAATTGTGACCATATTTGTACGAATGCTTGTTTAAATAA
ACTTTTTTTAAAAACCTTGTTTTACAATCTTTACATTCAAATA

>g16999.t4 Gene=g16999 Length=557
MAYGLLAGLDPVAGLYMAFFPVLIYFIFGSSRHVSVGTFAIVSIMTSKVVATYSDPNYGT
PEAFKENSFSNYQVATAATLACGIFHLGMFVLQLGVVASLLSEALVSGFTTGSAIHVVIT
QTKDLLGISFPRHKGAFKAILSVKDIILQIPHANLYTVYVSVSCMIFLIIVNEILRPIVA
KKTKLPIPAELIAVIVYTAVSYLMNFNENYKIDIVGKIPTGLPTPQFPSLNLVYMVAVDS
IAITVVSYSIVVSMGLICAKKDKTYEVRPNQELLALGAANVFGSCFSCIPLACALSRTMV
LYQLGGKTQIVSVVSALIILMLLLWIGPLFETLPRAILAAIIIVALKSMLWQFKDIKKYY
KESKLDALVWLGTFCTVVIIDIDIGLLVGFILSLFTLYMKGFKSYSCMLGQVTGTEIYVD
LKSHKNIKEIPGVKIFKYFGSINFATCSNFKKNLFENLNIDCHKIKAASHFDEKELNDRM
KTLIIDLSAVAHLDVRGYRMILEIKNELKIMDVNVLLACVSDVVYTSIQRAVNIGDGEIE
IFPTIHDAILFSEKKFE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
32 g16999.t4 CDD cd07042 STAS_SulP_like_sulfate_transporter 424 545 3.59339E-13
10 g16999.t4 Gene3D G3DSA:3.30.750.24 - 405 556 6.5E-31
5 g16999.t4 PANTHER PTHR11814 SULFATE TRANSPORTER 1 57 2.2E-200
8 g16999.t4 PANTHER PTHR11814:SF189 FI18412P1 1 57 2.2E-200
4 g16999.t4 PANTHER PTHR11814 SULFATE TRANSPORTER 71 464 2.2E-200
7 g16999.t4 PANTHER PTHR11814:SF189 FI18412P1 71 464 2.2E-200
3 g16999.t4 PANTHER PTHR11814 SULFATE TRANSPORTER 476 553 2.2E-200
6 g16999.t4 PANTHER PTHR11814:SF189 FI18412P1 476 553 2.2E-200
1 g16999.t4 Pfam PF00916 Sulfate permease family 1 372 2.0E-96
2 g16999.t4 Pfam PF01740 STAS domain 425 548 2.6E-18
11 g16999.t4 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 11 -
26 g16999.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 12 28 -
19 g16999.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 29 33 -
29 g16999.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 34 53 -
16 g16999.t4 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 54 73 -
22 g16999.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 74 101 -
17 g16999.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 102 155 -
25 g16999.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 156 175 -
12 g16999.t4 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 176 186 -
23 g16999.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 187 204 -
21 g16999.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 205 231 -
27 g16999.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 232 252 -
15 g16999.t4 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 253 272 -
28 g16999.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 273 297 -
20 g16999.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 298 308 -
31 g16999.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 309 329 -
13 g16999.t4 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 330 335 -
30 g16999.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 336 353 -
18 g16999.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 354 367 -
24 g16999.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 368 398 -
14 g16999.t4 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 399 557 -
44 g16999.t4 ProSiteProfiles PS50801 STAS domain profile. 423 552 20.918
9 g16999.t4 SUPERFAMILY SSF52091 SpoIIaa-like 426 548 5.49E-13
45 g16999.t4 TIGRFAM TIGR00815 sulP: sulfate permease 1 548 3.7E-123
40 g16999.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 5 27 -
37 g16999.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 34 53 -
35 g16999.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 73 92 -
34 g16999.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 97 119 -
41 g16999.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 153 175 -
42 g16999.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 187 206 -
43 g16999.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 230 252 -
33 g16999.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 273 295 -
36 g16999.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 310 329 -
39 g16999.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 336 353 -
38 g16999.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 368 390 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016020 membrane CC
GO:0055085 transmembrane transport BP
GO:0015116 sulfate transmembrane transporter activity MF
GO:0008272 sulfate transport BP
GO:0016021 integral component of membrane CC
GO:0008271 secondary active sulfate transmembrane transporter activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed