General information for g17003.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g17003 is located on chr_4: 12065854..12067128 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g17003 | g17003.t1 | isoform | g17003.t1 | 12065854 | 12067128 |
| chr_4 | g17003 | g17003.t1 | exon | g17003.t1.exon1 | 12065854 | 12067128 |
| chr_4 | g17003 | g17003.t1 | cds | g17003.t1.CDS1 | 12065854 | 12067128 |
| chr_4 | g17003 | g17003.t1 | TSS | g17003.t1 | NA | NA |
| chr_4 | g17003 | g17003.t1 | TTS | g17003.t1 | NA | NA |
Sequences
>g17003.t1 Gene=g17003 Length=1275
ATGGTTCATCCTAACCGCAAGACAGTTAGTGAGCGCCCAGCTCAGGAAGAGTCCAATCCT
CCATTAGGATCAATAGCACTTCCAGTACCTGCAGGTTATAGAATCCCCAGGGTTCAATCA
CGCGCTACTGAACGTGAATCGTTTACTCCGCCTCCACCTGAACCACATAGCAGTCACAAC
CGAAGTGGTCATTCATCACGCCATCGTGATCGTTCACCCGTTCCTCGTCGTCGTCATCGA
GACTCATCTTCTCCAAGAAGATCTAGACGCGATTCCTCACTCGAGCGTAACAGACGTCGT
TCTACTGATCGCCGACAGCTTTCAATCAGACGCTCACCATCTGGCTATCGTCAAGTTCAA
TTTGCCCCAGCAGTTGAAGCTTATTCGCCATCGCGCTCTCGTCATGGTTCTTCGTCTCGC
AGTCGTCAAGACAGAAGACACACACCACCGCATCATTCTCGCAATCGACGATCTCCTCTT
CGCGTTCAACAACCAGTCATCGCTCGTCAACAACCTCAACGTCCGTTAGCACTTGTCGAT
CGACTTGGACCTCGTATCATGCAGAACTCTCGAGTAGTTCGCCAAGTTCAAGATCGAAAC
CCAAGCGTCCTTAAGTTCGAAAATGTAGCTCTGGATGTCGACTTGCTCACTTTCTTGACA
CAACTTTCTCGTTCGATGCGCAGCGTCATTGGAGCAACTCGTGAGTTCGACTACGTTAAT
CAAGTTGTAGGACCAGCTATATTCGTGTACATTTGCGATCAAACTGAGTTGGACTACGCA
GTGATGAACACCATCACATTTGATTTCACTTCAGGGCGACAGGAAATACGTCCACTACTT
CTTTCAGCCACCATCACTTCCATACTTATCGGTGATCTCGACGTTCCATCGTCGAATGTT
ATTCCGACCGTAATGCTCCGCAATTTGGTATCCATACCAATTCGCCAAGCAATTGCATCC
ACCATTGACGCAGTGCAATTGATCTCTCAGTTCGATGTTCAAGTGACACATATTCGCTTA
CCGGGACAAACATCGGAATTGGCGAAAACCTCTTCGTTGGCATTCATTGGAATTTCCTCA
TCTGATAAAGTTGCTATGTTGGATGGGCTGGACATTGACCGTTGCGGTAAAAAATTACCA
GTTAACAAAAGCATCCAGGCTCCTGTTCTAATTCCGACCGGAATGATGAAACAACAACGT
GATGCTGACTGGGCACGACGCGCTTATGCCAGTAGTATGCTCATCTTGAAACCTAACCCC
TTCGTTGGATGTTGA
>g17003.t1 Gene=g17003 Length=424
MVHPNRKTVSERPAQEESNPPLGSIALPVPAGYRIPRVQSRATERESFTPPPPEPHSSHN
RSGHSSRHRDRSPVPRRRHRDSSSPRRSRRDSSLERNRRRSTDRRQLSIRRSPSGYRQVQ
FAPAVEAYSPSRSRHGSSSRSRQDRRHTPPHHSRNRRSPLRVQQPVIARQQPQRPLALVD
RLGPRIMQNSRVVRQVQDRNPSVLKFENVALDVDLLTFLTQLSRSMRSVIGATREFDYVN
QVVGPAIFVYICDQTELDYAVMNTITFDFTSGRQEIRPLLLSATITSILIGDLDVPSSNV
IPTVMLRNLVSIPIRQAIASTIDAVQLISQFDVQVTHIRLPGQTSELAKTSSLAFIGISS
SDKVAMLDGLDIDRCGKKLPVNKSIQAPVLIPTGMMKQQRDADWARRAYASSMLILKPNP
FVGC
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g17003.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 174 | - |
| 3 | g17003.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 62 | 84 | - |
| 2 | g17003.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 85 | 102 | - |
| 1 | g17003.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 139 | 158 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed