General information for g17006.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative fatty acyl-CoA reductase CG5065.
Parent gene
- The parent gene g17006 is located on chr_4: 12131091..12136421 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g17006 | g17006.t1 | TSS | g17006.t1 | 12130699 | 12130699 |
| chr_4 | g17006 | g17006.t1 | isoform | g17006.t1 | 12131091 | 12136421 |
| chr_4 | g17006 | g17006.t1 | exon | g17006.t1.exon1 | 12131091 | 12131193 |
| chr_4 | g17006 | g17006.t1 | cds | g17006.t1.CDS1 | 12131091 | 12131193 |
| chr_4 | g17006 | g17006.t1 | exon | g17006.t1.exon2 | 12133161 | 12133250 |
| chr_4 | g17006 | g17006.t1 | cds | g17006.t1.CDS2 | 12133161 | 12133250 |
| chr_4 | g17006 | g17006.t1 | exon | g17006.t1.exon3 | 12133310 | 12133350 |
| chr_4 | g17006 | g17006.t1 | cds | g17006.t1.CDS3 | 12133310 | 12133350 |
| chr_4 | g17006 | g17006.t1 | exon | g17006.t1.exon4 | 12133409 | 12133803 |
| chr_4 | g17006 | g17006.t1 | cds | g17006.t1.CDS4 | 12133409 | 12133803 |
| chr_4 | g17006 | g17006.t1 | exon | g17006.t1.exon5 | 12134945 | 12135490 |
| chr_4 | g17006 | g17006.t1 | cds | g17006.t1.CDS5 | 12134945 | 12135490 |
| chr_4 | g17006 | g17006.t1 | exon | g17006.t1.exon6 | 12135550 | 12135703 |
| chr_4 | g17006 | g17006.t1 | cds | g17006.t1.CDS6 | 12135550 | 12135703 |
| chr_4 | g17006 | g17006.t1 | exon | g17006.t1.exon7 | 12135764 | 12135870 |
| chr_4 | g17006 | g17006.t1 | cds | g17006.t1.CDS7 | 12135764 | 12135870 |
| chr_4 | g17006 | g17006.t1 | exon | g17006.t1.exon8 | 12136223 | 12136421 |
| chr_4 | g17006 | g17006.t1 | cds | g17006.t1.CDS8 | 12136223 | 12136421 |
| chr_4 | g17006 | g17006.t1 | TTS | g17006.t1 | NA | NA |
Sequences
>g17006.t1 Gene=g17006 Length=1635
ATGAGAATAAACGCAAAAAAATCTGACACATCACATTTATTGCAAAATGCATCAATTGCA
GACTTTTATGCAAATAAAAATATTTTTATTACGGGAGCTACAGGTTTTATGGGCAAAGTG
CTGCTCGAGACATTACTCCGTAAATGTGGACAAATCAATTGTATTTACATACTTGTGAGA
ATGAAGAGAGGCGTTGACCCAGTTCAGCGGTATCATGATTATGTCGATGACATGATTTTT
GATAACATCCGCAATACAACACCAGAAAGATTAACAAAAATTAAACTCATTAGTGGTGAC
ATAACTGAAGAAAATCTTGGAATTGGTCAAAAAGATGAACTCGAATTAATTGAAAATGTT
CACATTCTTTTCCATTGTGCTGCCAAAGCAAAATTCTCTTTGACATTGCGTGATGCGTTG
AGTTTTAACTTGCATGGAACTTTACGTGTTTTACATTTAGCTGAAAAAATGAGGAATCTT
TTAGTTTTCTCGCACTTTTCAACGTCTTATTGTAATCCTAATTTTAAAGTATTGGAAGAA
GCTTACATTGAACCATTTGAAGATCCTTTTAATGTCATCAAAGCACTTACATCAGGAAAT
GAGAAAGATTTAGAAACAATGGAACCAAAATTAATGCGTGGTATGCCAAACACTTATGCA
GTTAGTAAATTGCTCACCGAAGAACTCGTCTTTCGATTTAGTGATCGAATAAATTTTGTC
ATAACTCGACCAGCAGTTGTGATATCAGCATGGCAAGAACCTTATCCAGGATATGTTGAT
AATAAGAAAAATGGCATGATTGGTCCAATGATGGCTCGTGCAAGTGGTGCATTGAGAACA
ATTTTATCAAATCCAAATAAATTAATTGAATTCATCCCAGTTGATATTGCTACACATGCA
ATTATTGCTATGACATGCAAACGTGGACTTTTAGAAGGCAATGAAATTTTATACTGTAAT
ATTGTTGACACTAAAACAAAACCATGGACTTTTAAGCAATATTTTGACTTAGAAATGGAA
ACTTTCTATAAATATCCATTAAGAAATCAATTATGGTGGCCTTATTGTGTCATAACAGGC
AACAAATTCTATTATAATTTTAGAAGAGTTTTTTATCATTATTTGCCAGCAGCCATTGGT
GACTTTTTCACTATTGTTTTTAGAAGAAAACCACAATTGATTTTTGTTCAACGTAAATTT
GACCGCGGTATGAAAACACTCGGATTTTATAATCGTCGTGAATATCTGTACAAAAATGAG
CAGTTTTTAAATCTTCCAAAAGAAATGAATGAAAAAGATCGTGAACTTTTTTATTGTGAC
TTTGAAAGGCTTAATATGGAAGAAGTGTTGAGAAATTATGTCCTTGGTGTACGAAAATTT
ATTTTAAAAATTACCGACACTGATTCATTGGAATTTCGAAGAGGATTACTGACACTGTAT
TGGTATGTGGATCTTCTTGTGCTCATTATCTTCTATGCCGTCGCATTTGCCGTCATTTTA
CTGCTTCTTCTCTTTTTATTTGACCGTGAAGGTTTTCTTAAAATTTTCAATGATCTTTTT
AAATCCTTCATGTTTTTAGCTCAAAATAATTTCGTTATTAAAGATGAAGTTTTAGAAAAA
TGCAATCGAAGCTAG
>g17006.t1 Gene=g17006 Length=544
MRINAKKSDTSHLLQNASIADFYANKNIFITGATGFMGKVLLETLLRKCGQINCIYILVR
MKRGVDPVQRYHDYVDDMIFDNIRNTTPERLTKIKLISGDITEENLGIGQKDELELIENV
HILFHCAAKAKFSLTLRDALSFNLHGTLRVLHLAEKMRNLLVFSHFSTSYCNPNFKVLEE
AYIEPFEDPFNVIKALTSGNEKDLETMEPKLMRGMPNTYAVSKLLTEELVFRFSDRINFV
ITRPAVVISAWQEPYPGYVDNKKNGMIGPMMARASGALRTILSNPNKLIEFIPVDIATHA
IIAMTCKRGLLEGNEILYCNIVDTKTKPWTFKQYFDLEMETFYKYPLRNQLWWPYCVITG
NKFYYNFRRVFYHYLPAAIGDFFTIVFRRKPQLIFVQRKFDRGMKTLGFYNRREYLYKNE
QFLNLPKEMNEKDRELFYCDFERLNMEEVLRNYVLGVRKFILKITDTDSLEFRRGLLTLY
WYVDLLVLIIFYAVAFAVILLLLLFLFDREGFLKIFNDLFKSFMFLAQNNFVIKDEVLEK
CNRS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 12 | g17006.t1 | CDD | cd05236 | FAR-N_SDR_e | 26 | 346 | 7.00933E-90 |
| 13 | g17006.t1 | CDD | cd09071 | FAR_C | 371 | 462 | 1.88104E-25 |
| 8 | g17006.t1 | Gene3D | G3DSA:3.40.50.720 | - | 5 | 352 | 1.6E-61 |
| 3 | g17006.t1 | PANTHER | PTHR11011:SF65 | FATTY ACYL-COA REDUCTASE-RELATED | 15 | 491 | 1.5E-117 |
| 4 | g17006.t1 | PANTHER | PTHR11011 | MALE STERILITY PROTEIN 2-RELATED | 15 | 491 | 1.5E-117 |
| 1 | g17006.t1 | Pfam | PF07993 | Male sterility protein | 30 | 301 | 8.1E-62 |
| 2 | g17006.t1 | Pfam | PF03015 | Male sterility protein | 372 | 463 | 3.7E-20 |
| 10 | g17006.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 478 | - |
| 11 | g17006.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 479 | 507 | - |
| 9 | g17006.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 508 | 544 | - |
| 7 | g17006.t1 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 20 | 313 | 1.43E-27 |
| 5 | g17006.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 370 | 387 | - |
| 6 | g17006.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 485 | 507 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0080019 | fatty-acyl-CoA reductase (alcohol-forming) activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed