Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g17019 g17019.t1 isoform g17019.t1 12169646 12170761
chr_4 g17019 g17019.t1 exon g17019.t1.exon1 12169646 12170761
chr_4 g17019 g17019.t1 cds g17019.t1.CDS1 12169646 12170761
chr_4 g17019 g17019.t1 TSS g17019.t1 12170296 12170296
chr_4 g17019 g17019.t1 TTS g17019.t1 12170803 12170803

Sequences

>g17019.t1 Gene=g17019 Length=1116
ATGTCATTGGTATTAGCAAGAAGATCGGAACAGACAATTGTTATTGAATCACAAAAAATT
GTCAGTAAATCTATGACAATACAGTTTGAGAAAAAAACTAATGATTGCTATGATCCAAGT
CATATTTTAATCAAGAATTGCGATTTTATGGAATTTCCACAAAATATCAACAATTTTTAT
GAAGATCAATTAACTCTTGAGATTTTAGATTGTAAATTTTATTCATTCAAAGCAAAATAT
TTATCTAACTTAGAATATTTATGCAAACTTTATATTGTAAATTGTGGCCTAAAATCACTT
GAGAGCGATGTTTTCAAATCACTGTCTACAGTTGAAGAAATTTCTTTAAATAGCAATGAA
CTTGAAGAAATTGGTCCAGAAATATTTGATGGTTTACAAAACTTGCAATTTGTTGATTTG
AGAAATAACAAAAATATTGATATGGTTTTTGATGCCACAGATGAAACAACAAACACTTTG
GATGAAATTAAAGATGAAATCAAATTAAAATGCAAACCAAAAGGTGACAAAAATCAAGCA
ATAGCGAAAGTTCAACCGATTTTACAAAATTTAATTCCACTGGAAATTTTCAATAATTTG
AGCAACATTTTTGCTGATCCAGATTTCAAGGATTTTACAATTAAAGTTGGTGAGTCATCA
TTCAAAATTCATAAAATTCTTTTTGCAGCTCGCAGTTCAACTTTGGCTGAAATTTTCAAA
AACAATCCAGAAGCACAAGAATTGAATTTGCGTGACATTTCTGAGTCAATTTTCAAAGCT
GTTCATGATTTCATTTATAAAAATCAACTGCCAGAAGATGCGAACTACATTGAAATCTTT
GCTGCTGCTGCTCGTCTTAAAATTGATGACCTGATGAAAATTTCTGCTGAAAATTTGCAA
GAAAATGTTGATGAAAAAAATGCATTTGAAATTCTTTTGTTAAGCAACAAATTTGATCAT
GATCAAATGCGACAAAAATCATTTGAATTCATTCAAAATAAAATTTTTCCACATCGAAAA
CTTGATGCTGAACTTGCAAAACAACCTGAAAAATTGAAGAAATTGATTGATGCAAAAAAT
AAATTGGATCAAGAATTTGCAGAACTAAAAATGTAA

>g17019.t1 Gene=g17019 Length=371
MSLVLARRSEQTIVIESQKIVSKSMTIQFEKKTNDCYDPSHILIKNCDFMEFPQNINNFY
EDQLTLEILDCKFYSFKAKYLSNLEYLCKLYIVNCGLKSLESDVFKSLSTVEEISLNSNE
LEEIGPEIFDGLQNLQFVDLRNNKNIDMVFDATDETTNTLDEIKDEIKLKCKPKGDKNQA
IAKVQPILQNLIPLEIFNNLSNIFADPDFKDFTIKVGESSFKIHKILFAARSSTLAEIFK
NNPEAQELNLRDISESIFKAVHDFIYKNQLPEDANYIEIFAAAARLKIDDLMKISAENLQ
ENVDEKNAFEILLLSNKFDHDQMRQKSFEFIQNKIFPHRKLDAELAKQPEKLKKLIDAKN
KLDQEFAELKM

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g17019.t1 CDD cd18186 BTB_POZ_ZBTB_KLHL-like 211 286 4.45926E-13
9 g17019.t1 Coils Coil Coil 352 371 -
7 g17019.t1 Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor 4 199 7.4E-17
8 g17019.t1 Gene3D G3DSA:3.30.710.10 Potassium Channel Kv1.1; Chain A 200 337 4.9E-27
3 g17019.t1 PANTHER PTHR26379:SF309 OS02G0311150 PROTEIN 150 333 1.6E-16
4 g17019.t1 PANTHER PTHR26379 BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 150 333 1.6E-16
1 g17019.t1 Pfam PF13855 Leucine rich repeat 87 144 2.2E-11
2 g17019.t1 Pfam PF00651 BTB/POZ domain 204 302 1.0E-15
12 g17019.t1 ProSiteProfiles PS50097 BTB domain profile. 210 274 13.198
11 g17019.t1 SMART SM00225 BTB_4 210 303 3.0E-12
5 g17019.t1 SUPERFAMILY SSF52058 L domain-like 34 149 1.25E-15
6 g17019.t1 SUPERFAMILY SSF54695 POZ domain 190 302 5.89E-17

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values