General information for g17040.t14
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g17040 is located on chr_4: 12297939..12299240 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g17040 | g17040.t14 | TTS | g17040.t14 | 12287303 | 12287303 |
| chr_4 | g17040 | g17040.t14 | isoform | g17040.t14 | 12297430 | 12299240 |
| chr_4 | g17040 | g17040.t14 | exon | g17040.t14.exon1 | 12297430 | 12298251 |
| chr_4 | g17040 | g17040.t14 | TSS | g17040.t14 | 12297450 | 12297450 |
| chr_4 | g17040 | g17040.t14 | exon | g17040.t14.exon2 | 12298352 | 12298887 |
| chr_4 | g17040 | g17040.t14 | cds | g17040.t14.CDS1 | 12298473 | 12298887 |
| chr_4 | g17040 | g17040.t14 | exon | g17040.t14.exon3 | 12299029 | 12299240 |
| chr_4 | g17040 | g17040.t14 | cds | g17040.t14.CDS2 | 12299029 | 12299240 |
Sequences
>g17040.t14 Gene=g17040 Length=1570
ATTATTGAGAGTTCAAGTGAGCGCAAATAGACGTGATTTTGTTTTTGTTAAAAATTATTT
TTTTTGAAATTGTTTTTACAAAATTAAAAAAAAAATTCAAGTTTTTTAAGTTAAAAAATT
GTAAATTGTTTTTTTAATGAAAAATAAAAATAAAAAATGTAAAAATATTTTTGTAAAAAT
TGAACTAAATCTGAAAATTATTAAATATTTTTTTTAAAAGAGCACAGTTTGTTTTTCAAT
ATTTTTTTATAAGTAAATTTTGACCGAAAAAGGATAAAAGTCAATGTACCGAAAAATGTT
TAGGAAGTCACATATTTAGAAATTTTTTTTCGGTTATCTTGAATGTTTACTAAATTAACT
TTTTATTTCTTTTTTAGACCTTTAAAATGTTTTTCATCAATTTTTTTTATTTTAACTGCG
CATTTATGGCGATTTGTTTTGCTTTTGGAAGCAGTGAATTAAAATGTCAACTTGATTATA
AACTTGTAGACAATAACTGCATCGAAAAAATGAGTAGGTTTTTTAAAAAAAAATATTTAT
TAAATTTTATTTAAAGGATGAAAACTTCTATAATTTTCATAAAATAAGCGTTGAAAAAAT
TCCATTTTCCAGGCTATTTCATGCAAATTATTAAAAATGTTTATGAGATTTTAATAGTTT
TTTGATAGATTTGAATCACCCCTTAATTTTATCTTTTACCCTAATTCATTTTATTCATTT
ATATTTTAGACATGATTGATGGAATCATAACACAAGAAAAATGCTGTACGGTTACAAAAT
GTGCAATTCCTGATTATAAAAATGGAAGCTATCAACAATTTATGGTGAAAAAGTTGACAT
TTTTTATCTTCCAATAAAAGTGAATGAAATTTTTCCAAATTTAATTTCTTACACTGCATA
TCGAACTAAAGTTAAACATTTGACAAAAGAAAATTTCAAAGGAATGAAAAAATTATTCTA
TTTAGGTTTTGTTAATAATGAAATTGAAACAATTGATGATGACACTTTTGATGATTTGAA
TGAGTTAGAATATTTAAATTTGGAATCTAACAAAATGAAAATTTTAAATCCAAGAATTTT
TATGAATAATCTAAAACTTGAAAAATTAGATTTTTTTGTGAATCAAATTTCAACAATCAC
ACAACAATTTGGAAATTTAAAAAATCTGGCCCTTCTTAATTTGTCTAAAAATCAACTTAC
AGAACTTTCTTCTGATGTTTTTATAAATTTAGTCAATCTTGAATATCTTTTACTCCATGA
TAATAATTTTACTTCACTGCCATTAGATATTTTTGAAAGTCTTATTAACATTAAATCTTT
GGCTCTTTTCAATAATAAGTTTACATCACTTCCTGCAGAAAATTTTCTTAAAAATAATCA
TAAACTTGAAGAAATTAGGCTAAGTGGAAATAAAATCACAAAACTAAGTTACAAAATGTT
TGAAAATAAAGAAGATTTAAAAAGAGTTTTTTTAGAAAGAAATGCATGCATCAATATTGA
TTTTTGGAGAACATTAACAATTGAAACAAGAAACGTCTTAAAAAATGAAATTTTAAATAA
TTGTTCATAA
>g17040.t14 Gene=g17040 Length=208
MKKLFYLGFVNNEIETIDDDTFDDLNELEYLNLESNKMKILNPRIFMNNLKLEKLDFFVN
QISTITQQFGNLKNLALLNLSKNQLTELSSDVFINLVNLEYLLLHDNNFTSLPLDIFESL
INIKSLALFNNKFTSLPAENFLKNNHKLEEIRLSGNKITKLSYKMFENKEDLKRVFLERN
ACINIDFWRTLTIETRNVLKNEILNNCS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 15 | g17040.t14 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1 | 64 | 0.000e+00 |
| 16 | g17040.t14 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 65 | 207 | 0.000e+00 |
| 4 | g17040.t14 | PANTHER | PTHR45617:SF69 | SI:DKEY-1J5.4 | 5 | 99 | 0.000e+00 |
| 6 | g17040.t14 | PANTHER | PTHR45617 | - | 5 | 99 | 0.000e+00 |
| 5 | g17040.t14 | PANTHER | PTHR45617:SF69 | SI:DKEY-1J5.4 | 60 | 183 | 0.000e+00 |
| 7 | g17040.t14 | PANTHER | PTHR45617 | - | 60 | 183 | 0.000e+00 |
| 2 | g17040.t14 | Pfam | PF13855 | Leucine rich repeat | 7 | 62 | 0.000e+00 |
| 1 | g17040.t14 | Pfam | PF13855 | Leucine rich repeat | 67 | 109 | 0.000e+00 |
| 3 | g17040.t14 | Pfam | PF13855 | Leucine rich repeat | 122 | 180 | 2.000e-07 |
| 20 | g17040.t14 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 3 | 24 | 5.494e+00 |
| 23 | g17040.t14 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 27 | 48 | 5.733e+00 |
| 22 | g17040.t14 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 51 | 73 | 5.694e+00 |
| 18 | g17040.t14 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 74 | 95 | 7.235e+00 |
| 17 | g17040.t14 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 98 | 119 | 7.211e+00 |
| 19 | g17040.t14 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 122 | 143 | 7.165e+00 |
| 21 | g17040.t14 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 147 | 168 | 6.719e+00 |
| 12 | g17040.t14 | SMART | SM00369 | LRR_typ_2 | 1 | 24 | 4.500e+01 |
| 10 | g17040.t14 | SMART | SM00369 | LRR_typ_2 | 25 | 48 | 9.000e+00 |
| 9 | g17040.t14 | SMART | SM00369 | LRR_typ_2 | 72 | 95 | 1.200e-01 |
| 14 | g17040.t14 | SMART | SM00369 | LRR_typ_2 | 96 | 119 | 5.500e-03 |
| 11 | g17040.t14 | SMART | SM00369 | LRR_typ_2 | 120 | 143 | 3.500e+01 |
| 13 | g17040.t14 | SMART | SM00369 | LRR_typ_2 | 146 | 168 | 3.600e+01 |
| 8 | g17040.t14 | SUPERFAMILY | SSF52058 | L domain-like | 2 | 182 | 0.000e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed