Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g17040 g17040.t9 isoform g17040.t9 12295668 12298625
chr_4 g17040 g17040.t9 exon g17040.t9.exon1 12295668 12295677
chr_4 g17040 g17040.t9 exon g17040.t9.exon2 12297825 12297942
chr_4 g17040 g17040.t9 cds g17040.t9.CDS1 12297855 12297942
chr_4 g17040 g17040.t9 exon g17040.t9.exon3 12298159 12298625
chr_4 g17040 g17040.t9 cds g17040.t9.CDS2 12298159 12298625
chr_4 g17040 g17040.t9 TTS g17040.t9 12299137 12299137
chr_4 g17040 g17040.t9 TSS g17040.t9 NA NA

Sequences

>g17040.t9 Gene=g17040 Length=595
AATGTTTTTCATCAATTTTTTTTATTTTAACTGCGCATTTATGGCGATTTGTTTTGCTTT
TGGAAGCAGTGAATTAAAATGTCAACTTGATTATAAACTTGTAGACAATAACTGCATCGA
AAAAATGAACATGATTGATGGAATCATAACACAAGAAAAATGCTGTACGGTTACAAAATG
TGCAATTCCTGATTATAAAAATGGAAGCTATCAACAATTTAGTGTCAACGAGGAAACGAA
AATTACTGAAAATGATGCAGAAATCAAACCTAACTATAAAAGCAATAAAATTGAAATTTT
TTATATTGGAAAAAAATGCAGTGGTGAAAAAGTTGACATTTTTTATCTTCCAATAAAAGT
GAATGAAATTTTTCCAAATTTAATTTCTTACACTGCATATCGAACTAAAGTTAAACATTT
GACAAAAGAAAATTTCAAAGGAATGAAAAAATTATTCTATTTAGGTTTTGTTAATAATGA
AATTGAAACAATTGATGATGACACTTTTGATGATTTGAATGAGTTAGAATATTTAAATTT
GGAATCTAACAAAATGAAAATTTTAAATCCAAGAATTTTTATGAATAATCTAAAA

>g17040.t9 Gene=g17040 Length=185
MAICFAFGSSELKCQLDYKLVDNNCIEKMNMIDGIITQEKCCTVTKCAIPDYKNGSYQQF
SVNEETKITENDAEIKPNYKSNKIEIFYIGKKCSGEKVDIFYLPIKVNEIFPNLISYTAY
RTKVKHLTKENFKGMKKLFYLGFVNNEIETIDDDTFDDLNELEYLNLESNKMKILNPRIF
MNNLK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
3 g17040.t9 Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor 89 185 0
1 g17040.t9 Pfam PF13855 Leucine rich repeat 123 171 0
2 g17040.t9 SUPERFAMILY SSF52058 L domain-like 100 182 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed