Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Heat shock protein 23.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g17054 g17054.t7 TTS g17054.t7 12324668 12324668
chr_4 g17054 g17054.t7 isoform g17054.t7 12324809 12327543
chr_4 g17054 g17054.t7 exon g17054.t7.exon1 12324809 12325231
chr_4 g17054 g17054.t7 cds g17054.t7.CDS1 12324809 12325216
chr_4 g17054 g17054.t7 exon g17054.t7.exon2 12326772 12326965
chr_4 g17054 g17054.t7 exon g17054.t7.exon3 12327070 12327543
chr_4 g17054 g17054.t7 TSS g17054.t7 NA NA

Sequences

>g17054.t7 Gene=g17054 Length=1091
TTATTTCTTATCATCATTCTGTGATTTATCCTTAACACTTTCACGAGCTGGTGCATTTGT
ATGAGTGATTTCAATATTTCTTTCCTTAGTTCCTTCAATAGCTTGCGTTGGTGGCGGTGC
TTTGACAGTCAAAACTCCATCACTTGACAAAGTTGATTGAACTGTATTCATGTCGTATTC
TTGTGGCAACACATATTTGCGAACAAAACTTCTTTCAATGGTTCCATGTGCATCATCTCG
TTCTTCATGCTTTCCTTCAATTATGACAGTGTGATCTTGAACTTTGACAGAGATTTCATT
TGGTTTAAATTGCTGAACATCGACACTAGCTTGGAATCCTTCTTTGGATAATTTAATTGA
ACTTTGATCTTCATTTAATTCACTGAAAGCTTCACAAACCATTTGCCATGGACGATAATA
TGTTATTGGATAGAAAAAGTCATTTGGAATCATTCCAAATCTTGGTCTTAATTCATAAGC
AAAATATGGATCTCTAAGAAGTGCACGAACTATGCTTGACATTTTTTGATATATTTATTT
TTTTCTAACTTTGAAATTATTCGCTCTTCAAGTTTCACTTCTTTTTAGCTTGTCTTAAAA
ATTTTCACTTAGAGTTTTTCTTTGCTTTGAATTTTCTTCTTTTGCGTTTTCTATATTACT
GACCAAATTATCGTCCGTGGCAAATGGCTCGTCAAGCAATGTCTGAATTGAACAAAGATC
AAAAGTCATTGCAATTAGGCAAAGAAGGATTCCAAGCTTGTGTTGATGTTCAACACTTTA
AACCAAATGAAATCTCTGTCAAAGTTCAAGATCACACTGTCATAATTGAAGGAAAGCATG
AAGAACGAGATGATGCACATGGAACCATTGAAAGAAGTTTTGTTCGCAAATATGTGTTGC
CACAAGAATATGACATGAATACAGTTCAATCGACTTTGTCAAGTGATGGAGTTTTGACTA
TCAAGGCACCACCACCACAAGCTATTGATGGACCTAAGGAAAGAAATATTGAAATCACTC
ATACAAATGCACCAGCTCGTGAAAGTATTAAAGAAAACAAGTCTGAAGAGAAACAAGCCA
ATCAAAAATAA

>g17054.t7 Gene=g17054 Length=135
MARQAMSELNKDQKSLQLGKEGFQACVDVQHFKPNEISVKVQDHTVIIEGKHEERDDAHG
TIERSFVRKYVLPQEYDMNTVQSTLSSDGVLTIKAPPPQAIDGPKERNIEITHTNAPARE
SIKENKSEEKQANQK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
12 g17054.t7 CDD cd06526 metazoan_ACD 19 96 3.79946E-40
10 g17054.t7 Gene3D G3DSA:2.60.40.790 - 1 133 3.7E-31
14 g17054.t7 MobiDBLite mobidb-lite consensus disorder prediction 86 135 -
13 g17054.t7 MobiDBLite mobidb-lite consensus disorder prediction 106 135 -
2 g17054.t7 PANTHER PTHR45640:SF23 HEAT SHOCK PROTEIN 22-RELATED 6 126 9.0E-44
3 g17054.t7 PANTHER PTHR45640 HEAT SHOCK PROTEIN HSP-12.2-RELATED 6 126 9.0E-44
11 g17054.t7 PIRSF PIRSF036514 Sm_HSP_B1 1 135 1.1E-43
5 g17054.t7 PRINTS PR00299 Alpha crystallin signature 17 37 5.4E-20
6 g17054.t7 PRINTS PR00299 Alpha crystallin signature 39 52 5.4E-20
8 g17054.t7 PRINTS PR00299 Alpha crystallin signature 54 73 5.4E-20
7 g17054.t7 PRINTS PR00299 Alpha crystallin signature 76 97 5.4E-20
4 g17054.t7 PRINTS PR00299 Alpha crystallin signature 106 121 5.4E-20
1 g17054.t7 Pfam PF00011 Hsp20/alpha crystallin family 19 111 5.9E-27
15 g17054.t7 ProSiteProfiles PS01031 Small heat shock protein (sHSP) domain profile. 4 112 20.771
9 g17054.t7 SUPERFAMILY SSF49764 HSP20-like chaperones 20 110 9.07E-15

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values