Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Heat shock protein 67B1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g17055 g17055.t2 isoform g17055.t2 12326772 12327616
chr_4 g17055 g17055.t2 exon g17055.t2.exon1 12326772 12327616
chr_4 g17055 g17055.t2 TSS g17055.t2 12326778 12326778
chr_4 g17055 g17055.t2 cds g17055.t2.CDS1 12327091 12327543
chr_4 g17055 g17055.t2 TTS g17055.t2 12327624 12327624

Sequences

>g17055.t2 Gene=g17055 Length=845
ATTTGGTCAGTAATATAGAAAACGCAAAAGAAGAAAATTCAAAGCAAAGAAAAACTCTAA
GTGAAAATTTTTAAGACAAGCTAAAAAGAAGTGAAACTTGAAGAGCGAATAATTTCAAAG
TTAGAAAAAAATAAATATATCAAAAAATGTCAAGCATAGTTCGTGCACTTCTTAGAGATC
CATATTTTGCTTATGGTAAGTTTCCATTAAAAACAATTTGAACTTATTCTTGTATAAACC
AATAAATTTATTTATCTAAAAAATTATCACTTAATTAAATTATTTTTCTTATTTTATAGA
ATTAAGACCAAGATTTGGAATGATTCCAAATGACTTTTTCTATCCAATAACATATTATCG
TCCATGGCAAATGGTTTGTGAAGCTTTCAGTGAATTAAATGAAGATCAAAGTTCAATTAA
ATTATCCAAAGAAGGATTCCAAGCTAGTGTCGATGTTCAGCAATTTAAACCAAATGAAAT
CTCTGTCAAAGTTCAAGATCACACTGTCATAATTGAAGGAAAGCATGAAGAACGAGATGA
TGCACATGGAACCATTGAAAGAAGTTTTGTTCGCAAATATGTGTTGCCACAAGAATACGA
CATGAATACAGTTCAATCAACTTTGTCAAGTGATGGAGTTTTGACTGTCAAAGCACCGCC
ACCAACGCAAGCTATTGAAGGAACTAAGGAAAGAAATATTGAAATCACTCATACAAATGC
ACCAGCTCGTGAAAGTGTTAAGGATAAATCACAGAATGATGATAAGAAATAAAATTGTTT
TTCGGATTATTTTAAAATGTTTATGTTCTATAAGGTTTTAAATTTGTAAATACAAAAATT
GCAAT

>g17055.t2 Gene=g17055 Length=150
MIPNDFFYPITYYRPWQMVCEAFSELNEDQSSIKLSKEGFQASVDVQQFKPNEISVKVQD
HTVIIEGKHEERDDAHGTIERSFVRKYVLPQEYDMNTVQSTLSSDGVLTVKAPPPTQAIE
GTKERNIEITHTNAPARESVKDKSQNDDKK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
12 g17055.t2 CDD cd06526 metazoan_ACD 37 113 1.1803E-38
10 g17055.t2 Gene3D G3DSA:2.60.40.790 - 11 150 2.4E-32
14 g17055.t2 MobiDBLite mobidb-lite consensus disorder prediction 106 150 -
13 g17055.t2 MobiDBLite mobidb-lite consensus disorder prediction 124 150 -
2 g17055.t2 PANTHER PTHR45640:SF23 HEAT SHOCK PROTEIN 22-RELATED 27 143 5.1E-44
3 g17055.t2 PANTHER PTHR45640 HEAT SHOCK PROTEIN HSP-12.2-RELATED 27 143 5.1E-44
11 g17055.t2 PIRSF PIRSF036514 Sm_HSP_B1 9 150 4.8E-45
6 g17055.t2 PRINTS PR00299 Alpha crystallin signature 34 54 5.7E-19
7 g17055.t2 PRINTS PR00299 Alpha crystallin signature 56 69 5.7E-19
4 g17055.t2 PRINTS PR00299 Alpha crystallin signature 71 90 5.7E-19
5 g17055.t2 PRINTS PR00299 Alpha crystallin signature 93 114 5.7E-19
8 g17055.t2 PRINTS PR00299 Alpha crystallin signature 124 139 5.7E-19
1 g17055.t2 Pfam PF00011 Hsp20/alpha crystallin family 33 129 1.4E-26
15 g17055.t2 ProSiteProfiles PS01031 Small heat shock protein (sHSP) domain profile. 21 130 21.22
9 g17055.t2 SUPERFAMILY SSF49764 HSP20-like chaperones 33 129 1.71E-14

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values