Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Heat shock protein 67B1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g17055 g17055.t3 TSS g17055.t3 12326778 12326778
chr_4 g17055 g17055.t3 isoform g17055.t3 12326918 12327543
chr_4 g17055 g17055.t3 exon g17055.t3.exon1 12326918 12326970
chr_4 g17055 g17055.t3 cds g17055.t3.CDS1 12326964 12326970
chr_4 g17055 g17055.t3 exon g17055.t3.exon2 12327071 12327543
chr_4 g17055 g17055.t3 cds g17055.t3.CDS2 12327071 12327543
chr_4 g17055 g17055.t3 TTS g17055.t3 12327624 12327624

Sequences

>g17055.t3 Gene=g17055 Length=526
ATGTCAAGCATAGTTCGTGCACTTCTTAGAGATCCATATTTTGCTTATGGTAAAATTAAG
ACCAAGATTTGGAATGATTCCAAATGACTTTTTCTATCCAATAACATATTATCGTCCATG
GCAAATGGTTTGTGAAGCTTTCAGTGAATTAAATGAAGATCAAAGTTCAATTAAATTATC
CAAAGAAGGATTCCAAGCTAGTGTCGATGTTCAGCAATTTAAACCAAATGAAATCTCTGT
CAAAGTTCAAGATCACACTGTCATAATTGAAGGAAAGCATGAAGAACGAGATGATGCACA
TGGAACCATTGAAAGAAGTTTTGTTCGCAAATATGTGTTGCCACAAGAATACGACATGAA
TACAGTTCAATCAACTTTGTCAAGTGATGGAGTTTTGACTGTCAAAGCACCGCCACCAAC
GCAAGCTATTGAAGGAACTAAGGAAAGAAATATTGAAATCACTCATACAAATGCACCAGC
TCGTGAAAGTGTTAAGGATAAATCACAGAATGATGATAAGAAATAA

>g17055.t3 Gene=g17055 Length=159
MVKLRPRFGMIPNDFFYPITYYRPWQMVCEAFSELNEDQSSIKLSKEGFQASVDVQQFKP
NEISVKVQDHTVIIEGKHEERDDAHGTIERSFVRKYVLPQEYDMNTVQSTLSSDGVLTVK
APPPTQAIEGTKERNIEITHTNAPARESVKDKSQNDDKK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
12 g17055.t3 CDD cd06526 metazoan_ACD 46 122 9.41044E-39
10 g17055.t3 Gene3D G3DSA:2.60.40.790 - 20 159 3.0E-32
14 g17055.t3 MobiDBLite mobidb-lite consensus disorder prediction 121 159 -
13 g17055.t3 MobiDBLite mobidb-lite consensus disorder prediction 133 159 -
2 g17055.t3 PANTHER PTHR45640:SF23 HEAT SHOCK PROTEIN 22-RELATED 36 152 5.0E-44
3 g17055.t3 PANTHER PTHR45640 HEAT SHOCK PROTEIN HSP-12.2-RELATED 36 152 5.0E-44
11 g17055.t3 PIRSF PIRSF036514 Sm_HSP_B1 18 159 5.9E-45
8 g17055.t3 PRINTS PR00299 Alpha crystallin signature 43 63 7.0E-19
4 g17055.t3 PRINTS PR00299 Alpha crystallin signature 65 78 7.0E-19
5 g17055.t3 PRINTS PR00299 Alpha crystallin signature 80 99 7.0E-19
7 g17055.t3 PRINTS PR00299 Alpha crystallin signature 102 123 7.0E-19
6 g17055.t3 PRINTS PR00299 Alpha crystallin signature 133 148 7.0E-19
1 g17055.t3 Pfam PF00011 Hsp20/alpha crystallin family 42 138 1.6E-26
15 g17055.t3 ProSiteProfiles PS01031 Small heat shock protein (sHSP) domain profile. 30 139 21.22
9 g17055.t3 SUPERFAMILY SSF49764 HSP20-like chaperones 42 138 2.02E-14

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed