General information for g17069.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Chitin synthase chs-2.
Parent gene
- The parent gene g17069 is located on chr_4: 12385744..12392683 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g17069 | g17069.t1 | isoform | g17069.t1 | 12385744 | 12392683 |
| chr_4 | g17069 | g17069.t1 | exon | g17069.t1.exon1 | 12385744 | 12386080 |
| chr_4 | g17069 | g17069.t1 | cds | g17069.t1.CDS1 | 12385744 | 12386080 |
| chr_4 | g17069 | g17069.t1 | exon | g17069.t1.exon2 | 12386133 | 12386426 |
| chr_4 | g17069 | g17069.t1 | cds | g17069.t1.CDS2 | 12386133 | 12386426 |
| chr_4 | g17069 | g17069.t1 | exon | g17069.t1.exon3 | 12386645 | 12386851 |
| chr_4 | g17069 | g17069.t1 | cds | g17069.t1.CDS3 | 12386645 | 12386851 |
| chr_4 | g17069 | g17069.t1 | exon | g17069.t1.exon4 | 12387040 | 12387770 |
| chr_4 | g17069 | g17069.t1 | cds | g17069.t1.CDS4 | 12387040 | 12387770 |
| chr_4 | g17069 | g17069.t1 | exon | g17069.t1.exon5 | 12387977 | 12388087 |
| chr_4 | g17069 | g17069.t1 | cds | g17069.t1.CDS5 | 12387977 | 12388087 |
| chr_4 | g17069 | g17069.t1 | exon | g17069.t1.exon6 | 12388174 | 12388330 |
| chr_4 | g17069 | g17069.t1 | cds | g17069.t1.CDS6 | 12388174 | 12388330 |
| chr_4 | g17069 | g17069.t1 | exon | g17069.t1.exon7 | 12388661 | 12388824 |
| chr_4 | g17069 | g17069.t1 | cds | g17069.t1.CDS7 | 12388661 | 12388824 |
| chr_4 | g17069 | g17069.t1 | exon | g17069.t1.exon8 | 12388906 | 12389553 |
| chr_4 | g17069 | g17069.t1 | cds | g17069.t1.CDS8 | 12388906 | 12389553 |
| chr_4 | g17069 | g17069.t1 | exon | g17069.t1.exon9 | 12389905 | 12390037 |
| chr_4 | g17069 | g17069.t1 | cds | g17069.t1.CDS9 | 12389905 | 12390037 |
| chr_4 | g17069 | g17069.t1 | exon | g17069.t1.exon10 | 12390140 | 12390348 |
| chr_4 | g17069 | g17069.t1 | cds | g17069.t1.CDS10 | 12390140 | 12390348 |
| chr_4 | g17069 | g17069.t1 | exon | g17069.t1.exon11 | 12390461 | 12390697 |
| chr_4 | g17069 | g17069.t1 | cds | g17069.t1.CDS11 | 12390461 | 12390697 |
| chr_4 | g17069 | g17069.t1 | exon | g17069.t1.exon12 | 12390811 | 12391607 |
| chr_4 | g17069 | g17069.t1 | cds | g17069.t1.CDS12 | 12390811 | 12391607 |
| chr_4 | g17069 | g17069.t1 | exon | g17069.t1.exon13 | 12391816 | 12392683 |
| chr_4 | g17069 | g17069.t1 | cds | g17069.t1.CDS13 | 12391816 | 12392683 |
| chr_4 | g17069 | g17069.t1 | TSS | g17069.t1 | NA | NA |
| chr_4 | g17069 | g17069.t1 | TTS | g17069.t1 | NA | NA |
Sequences
>g17069.t1 Gene=g17069 Length=4893
ATGATGACAGAAATGGAATCAAATTATTATTACGAATCTTCAGCATCAGAAAATCAAGAA
GACGATGATGATGATCCAGAAGTTGCACTGACATTTCGCAAATCACCACATGATTTAAAA
TTATGGGATTCATTCCAAGATCCACCAGTTGATGAAACTTCAGCTTCATCAATTGACTCA
AAATTGATCAACCAACTCATCAAACTTATGAAAATTTTCACCTATTGGTTTGTCCTTGTT
GTTGTAGCAATTTCTAGTGTCTTATCAAAATTGACATTTTTATTAATGACATCAAATGTT
GTCGAAAACACAAGAACAAGCTATTGTGATACAAAATTGTCAGAAAAGCGACTTTTAGCA
TCAATATCAACACAACAAACAATTGCATGGCAATGGGCTGTGATTTTTGCCTTTTCTGTA
CCAGAAATTGGAACTTGGATCAGAGCAGTTCGTTTATGCTTTTTTAAAAAGATTAAAAAT
TTTGGAATTAAAGAATTTGGAATTGTCATGATTGCTGAAAGTTTTCATGTGCTTGGAATT
TGTTTATTGGCTTTTGCTGTGCTGCCTGAAATGGATTCATTGCAAGGAGCTATGTTGACT
AATTGTTTATGCTTTATTCCTGGTGTGCTATGCATGCTTTCAAGACCATACGATGAGTCA
AAAATTAAAATAAAGAAAATTCTCGACATTTCATCGATCGCTGTGCAAGTTCTTGGTTGG
CTCATTTGGCCAATTGCAATTTCAAATGCTGGAGGAAAGATTTGGTTTCTGCCACTTGCA
GTTTTATTGATTTCATGCCGATGGTGGGAAAATTTTGTGACTTATTGCAGTCCTTGGGAA
CCAATTCAATACCTCGCTTATATCAGAGACAAATGTTATGATTCTCGATACAAAATTTAC
GCCATAATTGCACCTTACAAAATTCTTTTATTCTTCATCTTCACATCAATCACAACTGGA
ACAACTTTTGATAATTTTTTCTCTGATTTTTATGAAAATTTTTCAAATCATACTGTGAAA
ATTATGGAAATCAAGCCAATGTTGAAAAATGAGCTTCCAAATTTTGATGATGTCACAAGT
GAATTTTATAGCTCAACATTAAATATCAAAAGTTATGTCATTTGGTGGACTTTATTGATT
CACATTTTGTCATCTTATTTTTGCTACATTTTTGGAAAATTCGCATGCAAAATTCAAATT
CAAATTTTCTCGTTTTCACTGCCAATTAATATTTCTGTGCCATTGACAGTTTCGACTTTA
ATTATTTTATATGGAATGCGAAACAGCAATGTTTGTGCATTTCATGGATTTTTACCTGAT
TATATTTTCTTTCATACACCATCAGTTGAATTTTTATTTGGTTATATTTTCAAACAATTC
ATTTGGCTTTGGGTTTTTTGGATTTTTTCACAATCTTGGATTACGAGACATTTATGGAGA
CCAAAAGGAATGAGAAATGCAAGCACTGAAAAGCTTTTTATTTTACCAATGTATGATAGT
TTAATTATTGATCAATCAATGGCTATGAATAGAAGAAGAGATGAATATGAGGAATTTGTT
GAGAATGAAATTGATCAATCAGATTATCCAGAACCAGAAAATATAATTGATGCAAAAGCT
TATGCAGGAAATCAAAGTAAAGAAGGAGTGACACAAAAAGATCATATTCCACAGATATTT
GTTTGTGCAACAATGTGGCATGAAACAAAAGAAGAACTCATAACATTTTTAAAATCAATT
CTACGACTTGATGAAGATCAATGTGCTAGAAGAATGGCAATGAAATATTTACAAATTGAT
AAAAACCAAATTGATAGTGAATATTATGATTTAGAAACTCACATTTTCTTTGATGATGCA
TTTGTTAGCAATAAAAATCTTTGTGAAAGTCCTGAAGCAACTCCAATAAATTCTTATGTA
AAACTTTTGATCAACAATGTTGAAGAAGCAGCAAGAGAAGTTTACAAAGTTAAAATCAAA
ATTCCACCACCAATTAAAATTGTTTGTCCATATGGAGGTCGTTTAATTTGGACTCTTCCA
GGACGCACAAAAATGATTGCCCATCTAAAAGACAAAAATAAAATCCGTCACAAAAAACGT
TGGTCACAAGTCATGTATATGTACTACCTTCTTGGTTATCGAATTATGCAACTTGATGCA
TCACCAGAAAGAAAAAGAATTATCGCACAAAATACTTATCTTTTAACACTCGATGGTGAC
ATTGATTTTCAACCTAAGGCAATGACATTGCTTGTTGATCGAATGAAAAATGACAAATAT
TTGGGAGCAGCTTGTGGTCGAATTCATCCAATTGGTCATGGTCCAATGGTTTGGTATCAA
GTTTTTGAATATGCAATTGGTCATTGGCTGCAAAAGGCAACTGAGCATGTTATTGGTTGT
GTACTTTGTAGTCCTGGTTGTTTTTCATTATTTCGTGGTCGAGCTTTGATGGAAAATAGT
GTAATGAAAAAATATACAACAAAATCAGATCAAGCAAGACACTATGTTCAATATGATCAA
GGTGAAGATCGATGGCTTTGCACTTTAATATTGAAACAAAAATATCGAGTTGAATATTGT
GCTGCTTCTGATGCTTACACTCATGCGCCTGAAGGATTTAATGAGTTTTACAATCAAAGG
AGAAGATGGGTTCCAAGTACAATAGCAAATATTTTTGACCTACTTGGTGATTCAGAGAGA
ATTTGTGAAGTAAACAACAATATTTCAAGACTTTATATTTTTTATCAATGTATTTTAATG
TTTGGAACAATTATTGGACCAGGAACAATTTTCCTTATGATGGTCAGCGCAATTCAATCA
GTTTTCCTAGTTGATATTTATGATGCTTTTGTCTACAATTTTATTCCATTGATTATTTTT
ATGCTAACTTGTTATTTATGTAAACAAAAATTTCAATTAATTGCTGCTTTTATTATAAGT
ATAATTTATTCATTAATTATGATGGCTGTTATGGTTGGAATTATGATTCAAGTTATCGAA
GACGGTCTTTTTGCACCATCATCAATGTTCTTTCTTACTGTTACCTTTCAAATTATCATC
ACAGGACTTTTACATCCACAAGAAATACATGCACTTCCAGCTGGTTTTATTTATTATGTC
ACAATTCCATGCATGTACATGCTTTTGACAATTTATTCACTTTTTAACATGAATGATGTT
AGTTGGGGAACAAGAGAAAATCCACAAGAAGCTGCTGGTGGTGGAAATGACGCAAAAATT
CAAAAAAGGCAAACCAAACTACAAAAATTCCTTGGTTTCTTACGACCAACAACTGATGAT
GATGAGGAAGGATCTTTTGATATTTCCTTTGCTGGTTTATTCCGTTGCATGTTTTGTACT
CATAAAAAAGCTGACACAACTGAAACACAATTACTTCACATTGGTGCATCACTTGCTGAA
ATAAATTCACGAATGAAAAATTTAGAACAAAAATTGGCAAGTGAAATTCAATCAGAAAAT
GACACAGATGAAGTAATGTCTGATAATGATGGGCTTGAAGATGTTCCATTAATGTCAAAA
GAGAAAGAAAAGTCAAGCAATCTTTTACCTGATTGGCTTTATGATCCTGATCTTTGTGAA
GGCGATACAGAAACAATTTCAGCAGCTGAAGAGCAATTTTGGGTTGACTTGATTGAAAAA
TATTTGCAACCAATTGAAATGACTGAAAAATATAAAGAAAATATGCAAAATCAACTTAAA
GCTTATCGTGACATTTCAGTTTTTGCATTTACAATGAGCAATGCTTTATTTGTCCTTATT
GTGTTTTTACTGCAACTTAATAAACAATATTTAAAAGTCAAATGGCCATTTGATGTACAA
AATGATATCATTTTTGATCAGTCAACTTTTGAATTCACAATTAGACAAGAATTTACTTAT
TTGGAACCAATTAGTATGCTCTTTGTTGGATTCTTTGGAATTGTCTTAATTGTGCAATTT
ATTGCTATGCTTTTTCATCGCTTTGCTACAATTTCACAGATTTTGGCAACGACTAAAATT
GATTGGTATTGCAGTAAAAAAGTTAAAGAAACAATGTCATCATCCGAGTTAAAAGAAAAT
GCAGTAGAGATTGCAAGATTTCTTCAAAAGCCAAGACCAGAATGGGAACCAATTGAAGAC
GATGATGATGAAATTTCAATAGCAAAACGCAGTCGTCGTGATACAATTCATCAACTTTTA
TTACAGCACAAAAAACAAAAAGATTGGAGCAATTTGGAGACAAATTTTAAGCGAGAACTT
TTTAAAGATGGTCAATTAAAATTAAAGAAATTAAATTTATCAAGAAAGACAATTTCAATA
CTTGATGACATGAGAAAATCAATGGCAGAATTTAAAAGAAAGAAAAAATCTTTAGAAATT
GTCAATCCATACATGGCGAGTAATCCAAGCAGTTATAGTTTAGCAACAAGTGCTTATTCA
GACAAAGATTCATTTACAATTTATCAAAGAACTTCATGCAGACATTCATCACCAATTCCA
TCAGTTGTTTATTCAACAAATCTTGGAATGAATAAAAATGACAGCCGAATGTCACTCGAA
AGTATCGAACTTGGTTTGAGTAGGAAAAGTGTGAATTTTAATGGAAACTTTAAGAAAAAA
GATGGACCACTATTGCCGTTAAAAAGTGCTTTGAAGAAGTCAAAAACTGAACCAGCAATT
GCTGTACAAGGCATCGACAATCCTTCATTTGTTAATGATGAAATTGAAATGCATGAGTTT
GGCAATTTAAATGAAGAAGATGAAATGAATTTTGATGAAAGCGACCAAAGTGATGATGGA
ATTATTGAAATAAAAATTCATGAAAATAATGATGAAAAAGTTGAGAAAATTAAAGAAAAT
GAAGAAAAAGATGAGAAAATTGAAAAACTATGA
>g17069.t1 Gene=g17069 Length=1630
MMTEMESNYYYESSASENQEDDDDDPEVALTFRKSPHDLKLWDSFQDPPVDETSASSIDS
KLINQLIKLMKIFTYWFVLVVVAISSVLSKLTFLLMTSNVVENTRTSYCDTKLSEKRLLA
SISTQQTIAWQWAVIFAFSVPEIGTWIRAVRLCFFKKIKNFGIKEFGIVMIAESFHVLGI
CLLAFAVLPEMDSLQGAMLTNCLCFIPGVLCMLSRPYDESKIKIKKILDISSIAVQVLGW
LIWPIAISNAGGKIWFLPLAVLLISCRWWENFVTYCSPWEPIQYLAYIRDKCYDSRYKIY
AIIAPYKILLFFIFTSITTGTTFDNFFSDFYENFSNHTVKIMEIKPMLKNELPNFDDVTS
EFYSSTLNIKSYVIWWTLLIHILSSYFCYIFGKFACKIQIQIFSFSLPINISVPLTVSTL
IILYGMRNSNVCAFHGFLPDYIFFHTPSVEFLFGYIFKQFIWLWVFWIFSQSWITRHLWR
PKGMRNASTEKLFILPMYDSLIIDQSMAMNRRRDEYEEFVENEIDQSDYPEPENIIDAKA
YAGNQSKEGVTQKDHIPQIFVCATMWHETKEELITFLKSILRLDEDQCARRMAMKYLQID
KNQIDSEYYDLETHIFFDDAFVSNKNLCESPEATPINSYVKLLINNVEEAAREVYKVKIK
IPPPIKIVCPYGGRLIWTLPGRTKMIAHLKDKNKIRHKKRWSQVMYMYYLLGYRIMQLDA
SPERKRIIAQNTYLLTLDGDIDFQPKAMTLLVDRMKNDKYLGAACGRIHPIGHGPMVWYQ
VFEYAIGHWLQKATEHVIGCVLCSPGCFSLFRGRALMENSVMKKYTTKSDQARHYVQYDQ
GEDRWLCTLILKQKYRVEYCAASDAYTHAPEGFNEFYNQRRRWVPSTIANIFDLLGDSER
ICEVNNNISRLYIFYQCILMFGTIIGPGTIFLMMVSAIQSVFLVDIYDAFVYNFIPLIIF
MLTCYLCKQKFQLIAAFIISIIYSLIMMAVMVGIMIQVIEDGLFAPSSMFFLTVTFQIII
TGLLHPQEIHALPAGFIYYVTIPCMYMLLTIYSLFNMNDVSWGTRENPQEAAGGGNDAKI
QKRQTKLQKFLGFLRPTTDDDEEGSFDISFAGLFRCMFCTHKKADTTETQLLHIGASLAE
INSRMKNLEQKLASEIQSENDTDEVMSDNDGLEDVPLMSKEKEKSSNLLPDWLYDPDLCE
GDTETISAAEEQFWVDLIEKYLQPIEMTEKYKENMQNQLKAYRDISVFAFTMSNALFVLI
VFLLQLNKQYLKVKWPFDVQNDIIFDQSTFEFTIRQEFTYLEPISMLFVGFFGIVLIVQF
IAMLFHRFATISQILATTKIDWYCSKKVKETMSSSELKENAVEIARFLQKPRPEWEPIED
DDDEISIAKRSRRDTIHQLLLQHKKQKDWSNLETNFKRELFKDGQLKLKKLNLSRKTISI
LDDMRKSMAEFKRKKKSLEIVNPYMASNPSSYSLATSAYSDKDSFTIYQRTSCRHSSPIP
SVVYSTNLGMNKNDSRMSLESIELGLSRKSVNFNGNFKKKDGPLLPLKSALKKSKTEPAI
AVQGIDNPSFVNDEIEMHEFGNLNEEDEMNFDESDQSDDGIIEIKIHENNDEKVEKIKEN
EEKDEKIEKL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 44 | g17069.t1 | CDD | cd04190 | Chitin_synth_C | 561 | 890 | 2.83157E-91 |
| 7 | g17069.t1 | Coils | Coil | Coil | 1138 | 1158 | - |
| 8 | g17069.t1 | Coils | Coil | Coil | 1225 | 1245 | - |
| 5 | g17069.t1 | Coils | Coil | Coil | 1441 | 1461 | - |
| 6 | g17069.t1 | Coils | Coil | Coil | 1613 | 1630 | - |
| 61 | g17069.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - |
| 62 | g17069.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 15 | - |
| 60 | g17069.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1605 | 1630 | - |
| 2 | g17069.t1 | PANTHER | PTHR22914:SF14 | CHITIN SYNTHASE 2, ISOFORM D | 20 | 1454 | 0.0 |
| 3 | g17069.t1 | PANTHER | PTHR22914 | CHITIN SYNTHASE | 20 | 1454 | 0.0 |
| 1 | g17069.t1 | Pfam | PF03142 | Chitin synthase | 732 | 981 | 4.4E-30 |
| 10 | g17069.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 72 | - |
| 38 | g17069.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 73 | 96 | - |
| 26 | g17069.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 97 | 127 | - |
| 36 | g17069.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 128 | 147 | - |
| 16 | g17069.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 148 | 167 | - |
| 30 | g17069.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 168 | 188 | - |
| 19 | g17069.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 189 | 193 | - |
| 31 | g17069.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 194 | 215 | - |
| 13 | g17069.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 216 | 226 | - |
| 28 | g17069.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 227 | 246 | - |
| 24 | g17069.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 247 | 251 | - |
| 29 | g17069.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 252 | 269 | - |
| 12 | g17069.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 270 | 298 | - |
| 35 | g17069.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 299 | 317 | - |
| 22 | g17069.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 318 | 371 | - |
| 32 | g17069.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 372 | 391 | - |
| 15 | g17069.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 392 | 402 | - |
| 43 | g17069.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 403 | 426 | - |
| 20 | g17069.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 427 | 451 | - |
| 39 | g17069.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 452 | 474 | - |
| 9 | g17069.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 475 | 912 | - |
| 34 | g17069.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 913 | 938 | - |
| 23 | g17069.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 939 | 949 | - |
| 41 | g17069.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 950 | 967 | - |
| 17 | g17069.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 968 | 973 | - |
| 33 | g17069.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 974 | 997 | - |
| 21 | g17069.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 998 | 1002 | - |
| 27 | g17069.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1003 | 1024 | - |
| 11 | g17069.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1025 | 1035 | - |
| 42 | g17069.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1036 | 1055 | - |
| 25 | g17069.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1056 | 1244 | - |
| 40 | g17069.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1245 | 1264 | - |
| 14 | g17069.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1265 | 1303 | - |
| 37 | g17069.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1304 | 1325 | - |
| 18 | g17069.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1326 | 1630 | - |
| 4 | g17069.t1 | SUPERFAMILY | SSF53448 | Nucleotide-diphospho-sugar transferases | 729 | 917 | 8.21E-15 |
| 52 | g17069.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 73 | 95 | - |
| 56 | g17069.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 128 | 150 | - |
| 59 | g17069.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 166 | 188 | - |
| 51 | g17069.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 242 | 264 | - |
| 46 | g17069.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 299 | 321 | - |
| 57 | g17069.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 373 | 395 | - |
| 58 | g17069.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 402 | 424 | - |
| 55 | g17069.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 451 | 470 | - |
| 48 | g17069.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 912 | 934 | - |
| 54 | g17069.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 949 | 966 | - |
| 47 | g17069.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 973 | 995 | - |
| 45 | g17069.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1005 | 1024 | - |
| 50 | g17069.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1031 | 1053 | - |
| 53 | g17069.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1245 | 1264 | - |
| 49 | g17069.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1304 | 1326 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004100 | chitin synthase activity | MF |
| GO:0016758 | hexosyltransferase activity | MF |
KEGG
Orthology
- This transcript has been annotated with K00698 (chitin synthase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed