General information for g17105.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Luciferin 4-monooxygenase.
Parent gene
- The parent gene g17105 is located on chr_4: 12486717..12487979 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g17105 | g17105.t1 | TTS | g17105.t1 | 12485981 | 12485981 |
| chr_4 | g17105 | g17105.t1 | isoform | g17105.t1 | 12486717 | 12487979 |
| chr_4 | g17105 | g17105.t1 | exon | g17105.t1.exon1 | 12486717 | 12487250 |
| chr_4 | g17105 | g17105.t1 | cds | g17105.t1.CDS1 | 12486717 | 12487250 |
| chr_4 | g17105 | g17105.t1 | exon | g17105.t1.exon2 | 12487767 | 12487979 |
| chr_4 | g17105 | g17105.t1 | cds | g17105.t1.CDS2 | 12487767 | 12487979 |
| chr_4 | g17105 | g17105.t1 | TSS | g17105.t1 | NA | NA |
Sequences
>g17105.t1 Gene=g17105 Length=747
ATGCTGATCATTTGCGATGAAATTGTTCAAAATGCTGTGAATTTGCTAAAAAGTGACATA
AAAATTATCACAGTGATGGAAGATGTTGAAAATTATGATTCAGTGACAAAAATATTGAAC
AGAGAAGCAGAAAAAGATTTTAAATATCCTGAAATCGACCCAAATTCAATTGCTGTTATT
TTAGTCTCTTCAGGAACAACTGAACATCTAAAGATTGTCGATGATGATGGAAATGCTTTG
GATAATTTTCAACAAGGTGAAATTTGTGTCAAACATGAAGTACCATTTGCTGGTTATATT
GATGAACCAGAGAGAACAAAAGAATCTTATGATGGTGGATGGTTTAAGACAGGTGACATT
GGATGTTTTGATGATGAAGACTTTCTTTTTATTATTGACCGTAAAAAAGAGATAATAAAA
TACCAAGGAATCAAAACAGCACCATCAGAATTAGAAGCAATAATATATGAAATTGATGGA
GTTGTCAGCAGTTGTGTTGTTGGAATTTATCAGGAAAATACCGGAAATGACATCATTCAT
GCTTTTGTAATTAAGAAAGATTCGAGTGATCTGAATGAAAATTTTATTTTAAATTTTGTT
GATTCAAAAGTCATGGAACAACGAAAAATTCGTGGTGGTGTTCATTTTATTGACAACTTT
CCATTGGGAAGGACAGGAAAAATTGACAAGAATATTTTGAAAATGAAGGCTAAAGAAATT
ATGAAGAAATTTATAATTAAAAATTAA
>g17105.t1 Gene=g17105 Length=248
MLIICDEIVQNAVNLLKSDIKIITVMEDVENYDSVTKILNREAEKDFKYPEIDPNSIAVI
LVSSGTTEHLKIVDDDGNALDNFQQGEICVKHEVPFAGYIDEPERTKESYDGGWFKTGDI
GCFDDEDFLFIIDRKKEIIKYQGIKTAPSELEAIIYEIDGVVSSCVVGIYQENTGNDIIH
AFVIKKDSSDLNENFILNFVDSKVMEQRKIRGGVHFIDNFPLGRTGKIDKNILKMKAKEI
MKKFIIKN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g17105.t1 | Gene3D | G3DSA:3.40.50.980 | - | 1 | 71 | 8.5e-06 |
| 8 | g17105.t1 | Gene3D | G3DSA:3.40.50.12780 | - | 72 | 136 | 0.0e+00 |
| 10 | g17105.t1 | Gene3D | G3DSA:3.30.300.30 | - | 137 | 243 | 0.0e+00 |
| 3 | g17105.t1 | PANTHER | PTHR24096:SF353 | GH16244P-RELATED | 2 | 67 | 0.0e+00 |
| 5 | g17105.t1 | PANTHER | PTHR24096 | LONG-CHAIN-FATTY-ACID–COA LIGASE | 2 | 67 | 0.0e+00 |
| 4 | g17105.t1 | PANTHER | PTHR24096:SF353 | GH16244P-RELATED | 70 | 237 | 0.0e+00 |
| 6 | g17105.t1 | PANTHER | PTHR24096 | LONG-CHAIN-FATTY-ACID–COA LIGASE | 70 | 237 | 0.0e+00 |
| 2 | g17105.t1 | Pfam | PF00501 | AMP-binding enzyme | 70 | 141 | 0.0e+00 |
| 1 | g17105.t1 | Pfam | PF13193 | AMP-binding enzyme C-terminal domain | 150 | 227 | 1.4e-06 |
| 7 | g17105.t1 | SUPERFAMILY | SSF56801 | Acetyl-CoA synthetase-like | 70 | 240 | 0.0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
