General information for g17114.t12
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Lysosomal aspartic protease.
Parent gene
- The parent gene g17114 is located on chr_4: 12519041..12520450 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g17114 | g17114.t12 | TTS | g17114.t12 | 12518088 | 12518088 |
| chr_4 | g17114 | g17114.t12 | isoform | g17114.t12 | 12518210 | 12519245 |
| chr_4 | g17114 | g17114.t12 | exon | g17114.t12.exon1 | 12518210 | 12518297 |
| chr_4 | g17114 | g17114.t12 | cds | g17114.t12.CDS1 | 12518210 | 12518297 |
| chr_4 | g17114 | g17114.t12 | exon | g17114.t12.exon2 | 12518554 | 12518963 |
| chr_4 | g17114 | g17114.t12 | cds | g17114.t12.CDS2 | 12518554 | 12518963 |
| chr_4 | g17114 | g17114.t12 | exon | g17114.t12.exon3 | 12519024 | 12519245 |
| chr_4 | g17114 | g17114.t12 | cds | g17114.t12.CDS3 | 12519024 | 12519104 |
| chr_4 | g17114 | g17114.t12 | TSS | g17114.t12 | NA | NA |
Sequences
>g17114.t12 Gene=g17114 Length=720
GATTTAAAAATTCAAAAGCAAACATTTGCAGAAGCAGTTTCAGAACCCGGTTTAGTTTTT
GTTGCTGCTAAATTTGATGGAATTCTTGGATTAGGCTACAAATCAATTTCAGTTGATGGA
GTTGAACCAGTTTTCTATAACATGTACAATCAAGGACTCATTTCAGAGCCAATTTTCTCA
TTTTATTTGAATCGTGATCCAAATGGCAAAGAAGGTGGAGAAATTATTTTTGGTGGAAGT
GATCCAGATCATTATGAAGGTGATTTCACTTATCTCCCAGTCAATCGCAAAGCATACTGG
CAATTCAAAATGGATGGAGTGAAAATTGGTGACAAAACTTTCTGTAATGGTGGATGCCAA
GCAATTGCTGACACTGGAACATCACTCATTGCTGGACCAACTGATGAAGTTACAGCAATT
AACAAAGCCATCGGTGGAACACCAATTTTAAATGGACAATACATGGTTAATTGTGACATG
ATACCAAATTTGCCTACAATTAAATTCACTTTGGGTGGCAAGGAATTTGCACTTGATGGA
TCTGATTATATTTTAAGAATCGCTCAAATGGGTAAAACTATTTGCTTGTCTGGTTTCATG
GGAATTAATATTCCACCACCAAATGGACCACTATGGATTCTCGGTGATGTTTTTATTGGA
AAATACTACACAGAATTTGATTTTGGCAATGACCGTGTTGGTTTTGCTGTCACAAAATAG
>g17114.t12 Gene=g17114 Length=192
MYNQGLISEPIFSFYLNRDPNGKEGGEIIFGGSDPDHYEGDFTYLPVNRKAYWQFKMDGV
KIGDKTFCNGGCQAIADTGTSLIAGPTDEVTAINKAIGGTPILNGQYMVNCDMIPNLPTI
KFTLGGKEFALDGSDYILRIAQMGKTICLSGFMGINIPPPNGPLWILGDVFIGKYYTEFD
FGNDRVGFAVTK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g17114.t12 | Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 1 | 191 | 3.5E-70 |
| 2 | g17114.t12 | PANTHER | PTHR47966:SF42 | CATHEPSIN D | 3 | 190 | 8.0E-79 |
| 3 | g17114.t12 | PANTHER | PTHR47966 | BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED | 3 | 190 | 8.0E-79 |
| 4 | g17114.t12 | PRINTS | PR00792 | Pepsin (A1) aspartic protease family signature | 26 | 39 | 2.6E-17 |
| 5 | g17114.t12 | PRINTS | PR00792 | Pepsin (A1) aspartic protease family signature | 74 | 85 | 2.6E-17 |
| 6 | g17114.t12 | PRINTS | PR00792 | Pepsin (A1) aspartic protease family signature | 165 | 180 | 2.6E-17 |
| 1 | g17114.t12 | Pfam | PF00026 | Eukaryotic aspartyl protease | 1 | 189 | 1.7E-66 |
| 8 | g17114.t12 | ProSitePatterns | PS00141 | Eukaryotic and viral aspartyl proteases active site. | 74 | 85 | - |
| 10 | g17114.t12 | ProSiteProfiles | PS51767 | Peptidase family A1 domain profile. | 1 | 189 | 46.819 |
| 7 | g17114.t12 | SUPERFAMILY | SSF50630 | Acid proteases | 1 | 189 | 3.25E-65 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006508 | proteolysis | BP |
| GO:0004190 | aspartic-type endopeptidase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
