Gene loci information

Transcript annotation

  • This transcript has been annotated as Lysosomal aspartic protease.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g17114 g17114.t39 TTS g17114.t39 12518088 12518088
chr_4 g17114 g17114.t39 isoform g17114.t39 12518624 12520362
chr_4 g17114 g17114.t39 exon g17114.t39.exon1 12518624 12518963
chr_4 g17114 g17114.t39 cds g17114.t39.CDS1 12518625 12518963
chr_4 g17114 g17114.t39 exon g17114.t39.exon2 12519024 12519251
chr_4 g17114 g17114.t39 cds g17114.t39.CDS2 12519024 12519104
chr_4 g17114 g17114.t39 exon g17114.t39.exon3 12519792 12519986
chr_4 g17114 g17114.t39 exon g17114.t39.exon4 12520047 12520222
chr_4 g17114 g17114.t39 exon g17114.t39.exon5 12520289 12520362
chr_4 g17114 g17114.t39 TSS g17114.t39 12520391 12520391

Sequences

>g17114.t39 Gene=g17114 Length=1013
ATGTCAAAAAAGTTTAGTGCAACAATTTTTCTTCTCCTTCAGCTTTTGCTGATTGTAAAT
GGAAAACTATTGAGAATTCCTTTGTATAAATTTGAATCAGCAAGACGCCATTTTCAAACC
GTAGGAACAGATCTCACACAAGTTCGTCTTGCAAATGTTCAAGGACCAACACCAGAACCA
TTGTCAAATTATCTTGATGCCCAATATTATGGACCAATTACAATTGGAAGTCCACCACAA
AGTTTCAAAGTTGTTTTTGACACTGGAAGTTCAAATTTATGGGTTCCATCAAAATCTTGT
TCACTTATGAACATTGCCTGTCTTATGCATAACAAATATGATTCGAAAAAAAGTTCAACA
TACGAGAAAAATGGAACAAAATTTCATATCGAATACGGTAGCGGTTCACTAAGTGGCTTC
TTGTCAACTGATACTGTCGGTGTAAATTGGTGATTTAAAAATTCAAAAGCAAACATTTGC
AGAAGCAGTTTCAGAACCCGGTTTAGTTTTTGTTGCTGCTAAATTTGATGGAATTCTTGG
ATTAGGCTACAAATCAATTTCAGTTGATGGAGTTGAACCAGTTTTCTATAACATGTACAA
TCAAGGACTCATTTCAGAGCCAATTTTCTCATTTTATTTGAATCGTGATCCAAATGGCAA
AGAAGGTGGAGAAATTATTTTTGGTGGAAGTGATCCAGATCATTATGAAGGTGATTTCAC
TTATCTCCCAGTCAATCGCAAAGCATACTGGCAATTCAAAATGGATGGAGTGAAAATTGG
TGACAAAACTTTCTGTAATGGTGGATGCCAAGCAATTGCTGACACTGGAACATCACTCAT
TGCTGGACCAACTGATGAAGTTACAGCAATTAACAAAGCCATCGGTGGAACACCAATTTT
AAATGGACAATACATGGTTAATTGTGACATGATACCAAATTTGCCTACAATTAAATTCAC
TTTGGGTGGCAAGGAATTTGCACTTGATGGATCTGATTATATTTTAAGAATCG

>g17114.t39 Gene=g17114 Length=140
MYNQGLISEPIFSFYLNRDPNGKEGGEIIFGGSDPDHYEGDFTYLPVNRKAYWQFKMDGV
KIGDKTFCNGGCQAIADTGTSLIAGPTDEVTAINKAIGGTPILNGQYMVNCDMIPNLPTI
KFTLGGKEFALDGSDYILRI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g17114.t39 Gene3D G3DSA:2.40.70.10 Acid Proteases 1 140 5.7E-50
2 g17114.t39 PANTHER PTHR47966:SF21 NAPSIN-A 2 140 3.3E-54
3 g17114.t39 PANTHER PTHR47966 BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 2 140 3.3E-54
4 g17114.t39 PRINTS PR00792 Pepsin (A1) aspartic protease family signature 26 39 4.3E-8
5 g17114.t39 PRINTS PR00792 Pepsin (A1) aspartic protease family signature 74 85 4.3E-8
1 g17114.t39 Pfam PF00026 Eukaryotic aspartyl protease 1 138 1.1E-47
7 g17114.t39 ProSitePatterns PS00141 Eukaryotic and viral aspartyl proteases active site. 74 85 -
9 g17114.t39 ProSiteProfiles PS51767 Peptidase family A1 domain profile. 1 140 33.276
6 g17114.t39 SUPERFAMILY SSF50630 Acid proteases 1 139 3.68E-46

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006508 proteolysis BP
GO:0004190 aspartic-type endopeptidase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed