General information for g17114.t43
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Lysosomal aspartic protease.
Parent gene
- The parent gene g17114 is located on chr_4: 12519041..12520450 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g17114 | g17114.t43 | TTS | g17114.t43 | 12518088 | 12518088 |
| chr_4 | g17114 | g17114.t43 | isoform | g17114.t43 | 12518845 | 12520362 |
| chr_4 | g17114 | g17114.t43 | exon | g17114.t43.exon1 | 12518845 | 12518963 |
| chr_4 | g17114 | g17114.t43 | cds | g17114.t43.CDS1 | 12518847 | 12518963 |
| chr_4 | g17114 | g17114.t43 | exon | g17114.t43.exon2 | 12519024 | 12519251 |
| chr_4 | g17114 | g17114.t43 | cds | g17114.t43.CDS2 | 12519024 | 12519251 |
| chr_4 | g17114 | g17114.t43 | exon | g17114.t43.exon3 | 12519796 | 12520362 |
| chr_4 | g17114 | g17114.t43 | cds | g17114.t43.CDS3 | 12519796 | 12519930 |
| chr_4 | g17114 | g17114.t43 | TSS | g17114.t43 | 12520391 | 12520391 |
Sequences
>g17114.t43 Gene=g17114 Length=914
ATGTCAAAAAAGTTTAGTGCAACAATTTTTCTTCTCCTTCAGCTTTTGCTGATTGTAAAT
GGAAAACTATTGAGGTAAATTGCTCAAATTATCGATTTTGAAAAATTTATTTCATTTTAC
GTCTTAATTTTTATTCTCAGAATTCCTTTGTATAAATTTGAATCAGCAAGACGCCATTTT
CAAACCGTAGGAACAGATCTCACACAAGTTCGTCTTGCAAATGTTCAAGGACCAACACCA
GAACCATTGTCAAATTATCTTGATGCCCAATATTATGGACCAATTACAATTGGAAGTCCA
CCACAAAGTTTCAAAGGTAAAAAATGTAGAAAATTTTAAATTTTTTTTATCATGTTTATG
TTTTTCTAATTCGCAGTTGTTTTTGACACTGGAAGTTCAAATTTATGGGTTCCATCAAAA
TCTTGTTCACTTATGAACATTGCCTGTCTTATGCATAACAAATATGATTCGAAAAAAAGT
TCAACATACGAGAAAAATGGAACAAAATTTCATATCGAATACGGTAGCGGTTCACTAAGT
GGCTTCTTGTCAACTGATACTGTCGGTATTGGTGATTTAAAAATTCAAAAGCAAACATTT
GCAGAAGCAGTTTCAGAACCCGGTTTAGTTTTTGTTGCTGCTAAATTTGATGGAATTCTT
GGATTAGGCTACAAATCAATTTCAGTTGATGGAGTTGAACCAGTTTTCTATAACATGTAC
AATCAAGGACTCATTTCAGAGCCAATTTTCTCATTTTATTTGAATCGTGATCCAAATGGC
AAAGAAGGTGGAGAAATTATTTTTGGTGGAAGTGATCCAGATCATTATGAAGGTGATTTC
ACTTATCTCCCAGTCAATCGCAAAGCATACTGGCAATTCAAAATGGATGGAGTGAAAATT
GGTGACAAAACTTT
>g17114.t43 Gene=g17114 Length=160
MNIACLMHNKYDSKKSSTYEKNGTKFHIEYGSGSLSGFLSTDTVGIGDLKIQKQTFAEAV
SEPGLVFVAAKFDGILGLGYKSISVDGVEPVFYNMYNQGLISEPIFSFYLNRDPNGKEGG
EIIFGGSDPDHYEGDFTYLPVNRKAYWQFKMDGVKIGDKT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g17114.t43 | Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 2 | 141 | 0.000 |
| 5 | g17114.t43 | Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 142 | 159 | 0.000 |
| 2 | g17114.t43 | PANTHER | PTHR47966 | BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED | 3 | 159 | 0.000 |
| 1 | g17114.t43 | Pfam | PF00026 | Eukaryotic aspartyl protease | 2 | 160 | 0.000 |
| 6 | g17114.t43 | ProSiteProfiles | PS51767 | Peptidase family A1 domain profile. | 1 | 160 | 38.053 |
| 3 | g17114.t43 | SUPERFAMILY | SSF50630 | Acid proteases | 3 | 159 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006508 | proteolysis | BP |
| GO:0004190 | aspartic-type endopeptidase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed