Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Heat shock protein 23.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g17121 g17121.t2 TTS g17121.t2 12532401 12532401
chr_4 g17121 g17121.t2 isoform g17121.t2 12533421 12535295
chr_4 g17121 g17121.t2 exon g17121.t2.exon1 12533421 12535141
chr_4 g17121 g17121.t2 cds g17121.t2.CDS1 12534645 12535141
chr_4 g17121 g17121.t2 exon g17121.t2.exon2 12535256 12535295
chr_4 g17121 g17121.t2 cds g17121.t2.CDS2 12535256 12535295
chr_4 g17121 g17121.t2 TSS g17121.t2 12535393 12535393

Sequences

>g17121.t2 Gene=g17121 Length=1761
ATGTCAATGCTTCCTCGTTCATTTTACAACGATCCATATGATCGCATTATTTCACGCAAT
CATCCTCATCATTATTTGCCGACCGGTTATTATCGACCATGGCAGGTTGCTCGTGAAACT
CTCAACGAGTTAAACAAGGATCAAAAGGTATCGCAAATTGGTGAAAATGGCTTTGAAGTA
TGTGTTGATGTTCAACATTTCCATCCGGAAGAAATTGATGTAAGAGTTCATGACAACACT
GTTGTTGTTGAAGGAAAGCATGAAGAACGAGATGATGAACATGGACAAATTCAACGTCAT
TTTGTACGCAAGTATGTTTTACCAAAAGGTTTCGATGGAAACTCAGTTCAATCGACATTG
TCGAGTGATGGCGTTTTAACTATTAAAGCACCACCACCTGCTATTGAAGGATCTCAACCA
CGTCGTCTTGAGATTACTCATACTAATGCACCATCACGCATTGGTATGAAATATCATAAT
AAGAAACCAAATGAAACTAATGGAACTGAACATGCTGAGTCTATGGAAACAAAGTAAATT
AAAAACTGATTTGTTTTCAGAAAATTCATTTATTTATTATTTAATATTTTTTATTAAGAT
TTTATTGCATGCAAATCAAGAAAAGAATTTTATTAATTTAACAATAAATTTTAACAAAAT
AACCAAGAAGAGACATGTTAAAATATTTTTTATCTCACCTACAAAAATTGATAAAAATCA
ACTAAGTAAGTTAAAAAGAAATTTCTACAATTTTCTGCAATAAAAGTCAATAATGTCAAT
TATCAATGAAATCTGACTTGTTAGATATTTTATACTAATTTTATGAAATAAAAACTTTTA
CCTTGTCTTCTTCTTGGGAAGTCTAGAAAAAATTGCTTTAAAATAACCAAGGAATGAAAT
TTCTTGATAACTAAAATAGATTAACCATTGAAAATCAAAAATTTTTAGTTAATTTGATAC
TTTTTTTGATAATTTGATTTGATAGATTTTTGGAAGAGTTCACAACTCTTGAAAATAACA
AAAGATAAAAATATCCAAAGTTTTCTACACTTGAGATATTTAATTATTTTAAGAGTAAAC
TTTAATCAGGCAAGGACATTCGAAAAAAGATTTTCTAAAAATCCCACAAAGATCTCAAAA
TTTTGCAAAATATCCAAAAAGATATTAAAAGATTCTAAAAATTTTTGTTTTCGTAAAATT
TGCACTGCGTTGAATTAAATGAAATTTTTATAAATTTCAAAATTTGTTAACATAAAACCA
AATTGGAACTTTGTTGATTTGTTTGTGCATGATTTTTCAATTAATTTTTTAGCTAAACAT
TGAATAAAGATTAAAATAGATGCTAATCTATAGTGACAAAAGTAAGAAAATATTTTAAAA
TGACAAAAATATACAAAAGTTGAAAGATTGCAAAAGATCTCAAAAGATCCTAATGAATCG
CAAAAATTTTTCAATGTTCTTGTTTAGACTTTAACCATAAATATAGAAATTGTTCTCATT
CCTTTAATTTATTTTTACGTAATAATTTTAAAAGTAGGAAAATTTAAGAAAAAGTGTCAT
AAAAGGTTTTCAAATAATTTTAATTTGGAATGAAGTGAAAGTTAAATTTTAATAAAGACT
TGCTTTGACTGATTACTGTTTGAACTGATAATTTATTTACAAATAAAACAAGTATTAAAA
ACAAACATTTCACGAGTTTGTAAATTTCAATTTCAGTTTGTTTAATTTTATTTTTCAATT
ACTTCCCTTTTGTTTATTGTA

>g17121.t2 Gene=g17121 Length=178
MSMLPRSFYNDPYDRIISRNHPHHYLPTGYYRPWQVARETLNELNKDQKVSQIGENGFEV
CVDVQHFHPEEIDVRVHDNTVVVEGKHEERDDEHGQIQRHFVRKYVLPKGFDGNSVQSTL
SSDGVLTIKAPPPAIEGSQPRRLEITHTNAPSRIGMKYHNKKPNETNGTEHAESMETK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g17121.t2 CDD cd06526 metazoan_ACD 54 131 1.14792E-39
9 g17121.t2 Gene3D G3DSA:2.60.40.790 - 31 165 7.4E-31
12 g17121.t2 MobiDBLite mobidb-lite consensus disorder prediction 148 178 -
11 g17121.t2 MobiDBLite mobidb-lite consensus disorder prediction 158 178 -
2 g17121.t2 PANTHER PTHR45640:SF23 HEAT SHOCK PROTEIN 22-RELATED 47 151 2.1E-43
3 g17121.t2 PANTHER PTHR45640 HEAT SHOCK PROTEIN HSP-12.2-RELATED 47 151 2.1E-43
6 g17121.t2 PRINTS PR00299 Alpha crystallin signature 52 72 3.4E-18
5 g17121.t2 PRINTS PR00299 Alpha crystallin signature 74 87 3.4E-18
7 g17121.t2 PRINTS PR00299 Alpha crystallin signature 89 108 3.4E-18
4 g17121.t2 PRINTS PR00299 Alpha crystallin signature 111 132 3.4E-18
1 g17121.t2 Pfam PF00011 Hsp20/alpha crystallin family 54 145 7.1E-27
13 g17121.t2 ProSiteProfiles PS01031 Small heat shock protein (sHSP) domain profile. 39 148 20.955
8 g17121.t2 SUPERFAMILY SSF49764 HSP20-like chaperones 54 145 1.46E-16

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed