Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Heat shock protein 23.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g17121 g17121.t4 isoform g17121.t4 12533421 12535385
chr_4 g17121 g17121.t4 exon g17121.t4.exon1 12533421 12535385
chr_4 g17121 g17121.t4 TTS g17121.t4 12533500 12533500
chr_4 g17121 g17121.t4 cds g17121.t4.CDS1 12534645 12535190
chr_4 g17121 g17121.t4 TSS g17121.t4 12535393 12535393

Sequences

>g17121.t4 Gene=g17121 Length=1965
TCGTAAAAGACACAAGAGTTTATCACATCAAGAAATTATTTTCTAAAACGCATTTAAATT
AAAGGAAAATTTTGGAGTGTAAAAGTTAAAATGTCAATGCTTCCTCGTTCATTTTACAAC
GATCCATATGGTAGGTGATTCTAGAAATTTTAAATTTTTTTAAAATAATTTAAAATTTCT
TCTAAATGATAAGAAATGGAGCCACGATTTGGTATGGGATTGTTACCCAGTGACTTTTTC
TCAGATCGCATTATTTCACGCAATCATCCTCATCATTATTTGCCGACCGGTTATTATCGA
CCATGGCAGGTTGCTCGTGAAACTCTCAACGAGTTAAACAAGGATCAAAAGGTATCGCAA
ATTGGTGAAAATGGCTTTGAAGTATGTGTTGATGTTCAACATTTCCATCCGGAAGAAATT
GATGTAAGAGTTCATGACAACACTGTTGTTGTTGAAGGAAAGCATGAAGAACGAGATGAT
GAACATGGACAAATTCAACGTCATTTTGTACGCAAGTATGTTTTACCAAAAGGTTTCGAT
GGAAACTCAGTTCAATCGACATTGTCGAGTGATGGCGTTTTAACTATTAAAGCACCACCA
CCTGCTATTGAAGGATCTCAACCACGTCGTCTTGAGATTACTCATACTAATGCACCATCA
CGCATTGGTATGAAATATCATAATAAGAAACCAAATGAAACTAATGGAACTGAACATGCT
GAGTCTATGGAAACAAAGTAAATTAAAAACTGATTTGTTTTCAGAAAATTCATTTATTTA
TTATTTAATATTTTTTATTAAGATTTTATTGCATGCAAATCAAGAAAAGAATTTTATTAA
TTTAACAATAAATTTTAACAAAATAACCAAGAAGAGACATGTTAAAATATTTTTTATCTC
ACCTACAAAAATTGATAAAAATCAACTAAGTAAGTTAAAAAGAAATTTCTACAATTTTCT
GCAATAAAAGTCAATAATGTCAATTATCAATGAAATCTGACTTGTTAGATATTTTATACT
AATTTTATGAAATAAAAACTTTTACCTTGTCTTCTTCTTGGGAAGTCTAGAAAAAATTGC
TTTAAAATAACCAAGGAATGAAATTTCTTGATAACTAAAATAGATTAACCATTGAAAATC
AAAAATTTTTAGTTAATTTGATACTTTTTTTGATAATTTGATTTGATAGATTTTTGGAAG
AGTTCACAACTCTTGAAAATAACAAAAGATAAAAATATCCAAAGTTTTCTACACTTGAGA
TATTTAATTATTTTAAGAGTAAACTTTAATCAGGCAAGGACATTCGAAAAAAGATTTTCT
AAAAATCCCACAAAGATCTCAAAATTTTGCAAAATATCCAAAAAGATATTAAAAGATTCT
AAAAATTTTTGTTTTCGTAAAATTTGCACTGCGTTGAATTAAATGAAATTTTTATAAATT
TCAAAATTTGTTAACATAAAACCAAATTGGAACTTTGTTGATTTGTTTGTGCATGATTTT
TCAATTAATTTTTTAGCTAAACATTGAATAAAGATTAAAATAGATGCTAATCTATAGTGA
CAAAAGTAAGAAAATATTTTAAAATGACAAAAATATACAAAAGTTGAAAGATTGCAAAAG
ATCTCAAAAGATCCTAATGAATCGCAAAAATTTTTCAATGTTCTTGTTTAGACTTTAACC
ATAAATATAGAAATTGTTCTCATTCCTTTAATTTATTTTTACGTAATAATTTTAAAAGTA
GGAAAATTTAAGAAAAAGTGTCATAAAAGGTTTTCAAATAATTTTAATTTGGAATGAAGT
GAAAGTTAAATTTTAATAAAGACTTGCTTTGACTGATTACTGTTTGAACTGATAATTTAT
TTACAAATAAAACAAGTATTAAAAACAAACATTTCACGAGTTTGTAAATTTCAATTTCAG
TTTGTTTAATTTTATTTTTCAATTACTTCCCTTTTGTTTATTGTA

>g17121.t4 Gene=g17121 Length=181
MEPRFGMGLLPSDFFSDRIISRNHPHHYLPTGYYRPWQVARETLNELNKDQKVSQIGENG
FEVCVDVQHFHPEEIDVRVHDNTVVVEGKHEERDDEHGQIQRHFVRKYVLPKGFDGNSVQ
STLSSDGVLTIKAPPPAIEGSQPRRLEITHTNAPSRIGMKYHNKKPNETNGTEHAESMET
K

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g17121.t4 CDD cd06526 metazoan_ACD 57 134 1.59813E-39
9 g17121.t4 Gene3D G3DSA:2.60.40.790 - 34 168 7.8E-31
12 g17121.t4 MobiDBLite mobidb-lite consensus disorder prediction 151 181 -
11 g17121.t4 MobiDBLite mobidb-lite consensus disorder prediction 161 181 -
2 g17121.t4 PANTHER PTHR45640:SF23 HEAT SHOCK PROTEIN 22-RELATED 49 154 2.2E-43
3 g17121.t4 PANTHER PTHR45640 HEAT SHOCK PROTEIN HSP-12.2-RELATED 49 154 2.2E-43
5 g17121.t4 PRINTS PR00299 Alpha crystallin signature 55 75 3.5E-18
7 g17121.t4 PRINTS PR00299 Alpha crystallin signature 77 90 3.5E-18
4 g17121.t4 PRINTS PR00299 Alpha crystallin signature 92 111 3.5E-18
6 g17121.t4 PRINTS PR00299 Alpha crystallin signature 114 135 3.5E-18
1 g17121.t4 Pfam PF00011 Hsp20/alpha crystallin family 57 148 7.4E-27
13 g17121.t4 ProSiteProfiles PS01031 Small heat shock protein (sHSP) domain profile. 42 151 20.955
8 g17121.t4 SUPERFAMILY SSF49764 HSP20-like chaperones 57 148 1.53E-16

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values