Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Heat shock protein 23.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g17121 g17121.t5 isoform g17121.t5 12534175 12535295
chr_4 g17121 g17121.t5 exon g17121.t5.exon1 12534175 12535141
chr_4 g17121 g17121.t5 TTS g17121.t5 12534394 12534394
chr_4 g17121 g17121.t5 cds g17121.t5.CDS1 12534645 12535141
chr_4 g17121 g17121.t5 exon g17121.t5.exon2 12535252 12535295
chr_4 g17121 g17121.t5 cds g17121.t5.CDS2 12535252 12535258
chr_4 g17121 g17121.t5 TSS g17121.t5 12535393 12535393

Sequences

>g17121.t5 Gene=g17121 Length=1011
ATGTCAATGCTTCCTCGTTCATTTTACAACGATCCATATGGTAGATCGCATTATTTCACG
CAATCATCCTCATCATTATTTGCCGACCGGTTATTATCGACCATGGCAGGTTGCTCGTGA
AACTCTCAACGAGTTAAACAAGGATCAAAAGGTATCGCAAATTGGTGAAAATGGCTTTGA
AGTATGTGTTGATGTTCAACATTTCCATCCGGAAGAAATTGATGTAAGAGTTCATGACAA
CACTGTTGTTGTTGAAGGAAAGCATGAAGAACGAGATGATGAACATGGACAAATTCAACG
TCATTTTGTACGCAAGTATGTTTTACCAAAAGGTTTCGATGGAAACTCAGTTCAATCGAC
ATTGTCGAGTGATGGCGTTTTAACTATTAAAGCACCACCACCTGCTATTGAAGGATCTCA
ACCACGTCGTCTTGAGATTACTCATACTAATGCACCATCACGCATTGGTATGAAATATCA
TAATAAGAAACCAAATGAAACTAATGGAACTGAACATGCTGAGTCTATGGAAACAAAGTA
AATTAAAAACTGATTTGTTTTCAGAAAATTCATTTATTTATTATTTAATATTTTTTATTA
AGATTTTATTGCATGCAAATCAAGAAAAGAATTTTATTAATTTAACAATAAATTTTAACA
AAATAACCAAGAAGAGACATGTTAAAATATTTTTTATCTCACCTACAAAAATTGATAAAA
ATCAACTAAGTAAGTTAAAAAGAAATTTCTACAATTTTCTGCAATAAAAGTCAATAATGT
CAATTATCAATGAAATCTGACTTGTTAGATATTTTATACTAATTTTATGAAATAAAAACT
TTTACCTTGTCTTCTTCTTGGGAAGTCTAGAAAAAATTGCTTTAAAATAACCAAGGAATG
AAATTTCTTGATAACTAAAATAGATTAACCATTGAAAATCAAAAATTTTTAGTTAATTTG
ATACTTTTTTTGATAATTTGATTTGATAGATTTTTGGAAGAGTTCACAACT

>g17121.t5 Gene=g17121 Length=167
MVDRIISRNHPHHYLPTGYYRPWQVARETLNELNKDQKVSQIGENGFEVCVDVQHFHPEE
IDVRVHDNTVVVEGKHEERDDEHGQIQRHFVRKYVLPKGFDGNSVQSTLSSDGVLTIKAP
PPAIEGSQPRRLEITHTNAPSRIGMKYHNKKPNETNGTEHAESMETK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g17121.t5 CDD cd06526 metazoan_ACD 43 120 4.55769E-39
9 g17121.t5 Gene3D G3DSA:2.60.40.790 - 20 154 6.1E-31
12 g17121.t5 MobiDBLite mobidb-lite consensus disorder prediction 137 167 -
11 g17121.t5 MobiDBLite mobidb-lite consensus disorder prediction 147 167 -
2 g17121.t5 PANTHER PTHR45640:SF23 HEAT SHOCK PROTEIN 22-RELATED 36 140 1.9E-43
3 g17121.t5 PANTHER PTHR45640 HEAT SHOCK PROTEIN HSP-12.2-RELATED 36 140 1.9E-43
5 g17121.t5 PRINTS PR00299 Alpha crystallin signature 41 61 2.8E-18
7 g17121.t5 PRINTS PR00299 Alpha crystallin signature 63 76 2.8E-18
4 g17121.t5 PRINTS PR00299 Alpha crystallin signature 78 97 2.8E-18
6 g17121.t5 PRINTS PR00299 Alpha crystallin signature 100 121 2.8E-18
1 g17121.t5 Pfam PF00011 Hsp20/alpha crystallin family 43 134 5.7E-27
13 g17121.t5 ProSiteProfiles PS01031 Small heat shock protein (sHSP) domain profile. 28 137 20.955
8 g17121.t5 SUPERFAMILY SSF49764 HSP20-like chaperones 43 134 1.22E-16

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed