Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g17131 g17131.t1 isoform g17131.t1 12549437 12550654
chr_4 g17131 g17131.t1 exon g17131.t1.exon1 12549437 12550654
chr_4 g17131 g17131.t1 cds g17131.t1.CDS1 12549437 12550654
chr_4 g17131 g17131.t1 TSS g17131.t1 NA NA
chr_4 g17131 g17131.t1 TTS g17131.t1 NA NA

Sequences

>g17131.t1 Gene=g17131 Length=1218
ATGGAGAATTATCAATGGATTTTGGAACATTCACTTTTATATAAATTCAAAGTAATCAAC
AAAGAAACTCTACTTGATGAAGAAGAATTTTACACATCGAAAGAAAAATACATAAAATTT
TCCTTCAAAAGCTGCATTTTTCGTGAGTTTCCAATATTTCCACATCCTGAAGATTTAACG
ACACTTGAAATATCAAAAACAAAACTTGAAAAAATTGAACGTGCGGATTTGAAAGATTTT
AAAAATTTAGTTGAACTTTATGTTTTCGATTGTGGTCTAAGAAAGCTAAATGGTGACATT
TTGAGAGATTTAAAAAATCTTTCAATAATTTCATTTGCAAGAAACAAGCTGCAAATTATT
GATTCAGAAATTTTTGATGGATTGGAATTGATTCATTTTGTTGATTTTAGAGGAAATTTC
AGCATCAGTGGATTGTACCAATTGATTAAAGAATTTTCAACATGGCCATCACTTGATGAT
TTAAAAAAAGAAATTAAACAAAATTGCTTTGAAACAAAAACTTTGTCATGCCTTACAAAT
GAAGAAAAATTTCAAAATATGAAAGAAGAAATTGAAATTCTTACAAGAGGTCTAAAAGCA
ACTGAAGAAGAATTACGTGGTGAAAAAATTTTCAAAAATGAACTACTAAAAGAAAATGAA
GTTTTGTATTCTTTAAAAGCAATTTTTGATGATGCAGCATTTAAAGATTTTACAATTCAT
GTTGGCAAATCTTCATTTAAAATTCATAAAACTCTTTTTGCTGCTCACAGTTCAACTTTG
GCTGACATTTTCAAAAATAATCCAAATGCACAAGAACTTAATGTTCAAGATATTTCTGAA
TCAATTTTTAAAAATATTTATGAATTTATTTATGAAAATTTTCTACCTGATGATGCAAAT
TATCTTGAAATTTTCATTGCTGCTTCATTATTGAAAATTAAAAATTTGAAAGAAATTGCT
GCATTAGAACTTTTAGAAAAGATTGATGAAAAAAATGCATTAGAAGTTTTAATGGCAAGC
AATAAATTCAATCATCAAGAAATGCGACAAAAATCATTTGAAATTATTCAAACTAAAATT
TTTCCTGTTCGATTAATTGATGAAAAATTTGCAAAACAACCAGAAATGCTGAAAGAATTG
ATTGAAACTAAAATTACATTGGATAAAAAATATGAAGAAATGTGTAAGAAAATGGAAGTT
GCTGCTGTTAAGAAATAA

>g17131.t1 Gene=g17131 Length=405
MENYQWILEHSLLYKFKVINKETLLDEEEFYTSKEKYIKFSFKSCIFREFPIFPHPEDLT
TLEISKTKLEKIERADLKDFKNLVELYVFDCGLRKLNGDILRDLKNLSIISFARNKLQII
DSEIFDGLELIHFVDFRGNFSISGLYQLIKEFSTWPSLDDLKKEIKQNCFETKTLSCLTN
EEKFQNMKEEIEILTRGLKATEEELRGEKIFKNELLKENEVLYSLKAIFDDAAFKDFTIH
VGKSSFKIHKTLFAAHSSTLADIFKNNPNAQELNVQDISESIFKNIYEFIYENFLPDDAN
YLEIFIAASLLKIKNLKEIAALELLEKIDEKNALEVLMASNKFNHQEMRQKSFEIIQTKI
FPVRLIDEKFAKQPEMLKELIETKITLDKKYEEMCKKMEVAAVKK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g17131.t1 CDD cd18186 BTB_POZ_ZBTB_KLHL-like 236 311 3.78933E-12
7 g17131.t1 Coils Coil Coil 184 204 -
5 g17131.t1 Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor 21 209 4.5E-15
6 g17131.t1 Gene3D G3DSA:3.30.710.10 Potassium Channel Kv1.1; Chain A 210 359 2.1E-23
1 g17131.t1 Pfam PF00651 BTB/POZ domain 226 323 3.3E-14
8 g17131.t1 ProSiteProfiles PS50097 BTB domain profile. 235 299 12.619
4 g17131.t1 SMART SM00225 BTB_4 235 328 3.8E-12
2 g17131.t1 SUPERFAMILY SSF52058 L domain-like 40 161 3.06E-14
3 g17131.t1 SUPERFAMILY SSF54695 POZ domain 221 326 7.85E-16

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed