Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g17132 g17132.t1 isoform g17132.t1 12550778 12551386
chr_4 g17132 g17132.t1 exon g17132.t1.exon1 12550778 12551386
chr_4 g17132 g17132.t1 cds g17132.t1.CDS1 12550778 12551386
chr_4 g17132 g17132.t1 TSS g17132.t1 NA NA
chr_4 g17132 g17132.t1 TTS g17132.t1 NA NA

Sequences

>g17132.t1 Gene=g17132 Length=609
ATGACAGAAATAAATTGTAAATTTGAAAGAATTTTTTCAAATTATCGTTGTTTAATAGAA
AATCAGAAAATTCATAAAAATCTAATTACAATTAATGGAAAACATTTGACTGGAAAAACA
AACAATCAAGTCAATCAAATTTATCTAACTGAATGTGATTTTGAAGAATTTCCAGAAAAA
TTACAAAAGATTTTTTCAAATGTAGAAAGTCTTCGGATTTGGAAATGCAAACTCGATAAA
ATTAACAGAAAACACATAAAAAATTGGAAAAAGTTGACTCACATTTATGTTGAAAATTGT
GAATTAAGAAAATTGGAAGGTGACACATTCAAAGATTTAAAAGAACTCAAATTTATTTCA
TTTGATGGCAATAAACTTGAAGAAATTGAGCCAAAAACTTTTGATGGTTTAGAAAAATTA
GAATGGTTGAATTTGAGAAGAAATTTAAATATTGACATGAGGTTTGACATTGATGATGAA
AGAAGTAATTCATTGAATGAAATAAAGAAAGAAATAAAAATGAAGTGCATAAAGAAAAAT
TCAAATTTTGAAGAACCGGGCAGGAAAAGAAAAATGTTTAAGAAATTTTGTTATTGTTCT
AGAGATTAA

>g17132.t1 Gene=g17132 Length=202
MTEINCKFERIFSNYRCLIENQKIHKNLITINGKHLTGKTNNQVNQIYLTECDFEEFPEK
LQKIFSNVESLRIWKCKLDKINRKHIKNWKKLTHIYVENCELRKLEGDTFKDLKELKFIS
FDGNKLEEIEPKTFDGLEKLEWLNLRRNLNIDMRFDIDDERSNSLNEIKKEIKMKCIKKN
SNFEEPGRKRKMFKKFCYCSRD

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g17132.t1 Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor 1 182 0
2 g17132.t1 PANTHER PTHR45712 AGAP008170-PA 26 149 0
3 g17132.t1 PANTHER PTHR45712:SF22 AGAP008170-PA 26 149 0
1 g17132.t1 Pfam PF13855 Leucine rich repeat 91 148 0
4 g17132.t1 SUPERFAMILY SSF52058 L domain-like 41 152 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed