Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g17158 g17158.t1 TSS g17158.t1 12662467 12662467
chr_4 g17158 g17158.t1 isoform g17158.t1 12662532 12663719
chr_4 g17158 g17158.t1 exon g17158.t1.exon1 12662532 12663719
chr_4 g17158 g17158.t1 cds g17158.t1.CDS1 12662532 12663719
chr_4 g17158 g17158.t1 TTS g17158.t1 12664064 12664064

Sequences

>g17158.t1 Gene=g17158 Length=1188
ATGCAAGAAATTGTCTGCAATTACGATTTTATGTACAAACATTATCGCTGTCATATTGAT
AAGAAAACAATTGAGAATGACAAAATTGCCTTAAAAGGTACACAAATTGTTGGAAAAACA
AATGAAGACGTAAAATGGCTTGATTTTAGTGAATGCAAAATTTTAACATTTCCAACAAAT
TTACACGAATTTATTCCAAATATTACAAGTCTCAGAATCAACTGCTGCAATCTTGAACAT
TTTTCACGTGAGCATATCAAAAATTTCAAAAGTCTTGTTTATTTTCGCATTGAAAATTGT
GGATTGAAAAAACTTAAAAGTGATCTCTTCAAGAATTTAAACAATCTTTGGCATATTTCA
TTCAGAAATAACGAACTGGAAGATATTGAGCCGCAAATTCTTGAGAATTTGCCTAAATTA
AGATTTGTGGATTTTCGTGGAAACAAAAATTATGACATGTGGCATGATTCATCTGTAGCA
TCCAGTAATTCTTTGGGTGAAATTAAAAAAGATTTGGTCATCAAATCTGATCCACTTGCA
ATGTTTTTCCATCAACAAGAAGTGAAAGAACCAAAAGATGATCAAAAGAAGAAAATGCAA
AAATTAGAACAACAAAATCAAAAATTGACAGCTGAAATTGAAAGAATGAAGAAAAATGAA
CAAAGTTTGCTTGAAATTTTGACAATTTTAACTGATGATGCTTTCAAAGATTTCACAATC
AACATCAATGAAACTTCATTTCAAATTCACAAAACACTTTTTGCTGCTCGAAGCTCAACT
TTGGCTGATCTCTTTCGAAACAATCCAGAAGTTCAAGAACTAAATCTTCGTGATATTCCT
GAACAAACTTTCAAAGCAATTCATGATTTTATTTACACTAATCGTCTTCCAAATGATGTC
AATCATCTTGAAACTTTTGCTGCTGCTTCACAACTGAAAATTAAGGAATTGATAAAAATT
TCAAGTGAAAATCTTTTGGCAAATTTAAAAGAGGAAAATTCTTTTGAAATGCTTGTGTTG
AGCAATAAATTTGAGAATGAAAAAATGAGAAAAAAATCTTTTGATGTCATTCAAAATAAA
ATTTTTCCTGAACGCAAATTGGACCCAGAATTGGCAAAACATCCTGATAAATTGAAGAAA
TTGATTGACATGAAGAAAATGTTGGAAATGGAATTTCTTAATTTATAG

>g17158.t1 Gene=g17158 Length=395
MQEIVCNYDFMYKHYRCHIDKKTIENDKIALKGTQIVGKTNEDVKWLDFSECKILTFPTN
LHEFIPNITSLRINCCNLEHFSREHIKNFKSLVYFRIENCGLKKLKSDLFKNLNNLWHIS
FRNNELEDIEPQILENLPKLRFVDFRGNKNYDMWHDSSVASSNSLGEIKKDLVIKSDPLA
MFFHQQEVKEPKDDQKKKMQKLEQQNQKLTAEIERMKKNEQSLLEILTILTDDAFKDFTI
NINETSFQIHKTLFAARSSTLADLFRNNPEVQELNLRDIPEQTFKAIHDFIYTNRLPNDV
NHLETFAAASQLKIKELIKISSENLLANLKEENSFEMLVLSNKFENEKMRKKSFDVIQNK
IFPERKLDPELAKHPDKLKKLIDMKKMLEMEFLNL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g17158.t1 CDD cd18186 BTB_POZ_ZBTB_KLHL-like 237 312 6.23682E-13
8 g17158.t1 Coils Coil Coil 192 226 -
6 g17158.t1 Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor 2 172 3.6E-21
7 g17158.t1 Gene3D G3DSA:3.30.710.10 Potassium Channel Kv1.1; Chain A 193 360 1.1E-21
3 g17158.t1 PANTHER PTHR24413 SPECKLE-TYPE POZ PROTEIN 184 389 3.3E-13
1 g17158.t1 Pfam PF13855 Leucine rich repeat 91 149 2.8E-8
2 g17158.t1 Pfam PF00651 BTB/POZ domain 233 327 1.2E-13
11 g17158.t1 ProSiteProfiles PS50097 BTB domain profile. 236 300 13.115
10 g17158.t1 SMART SM00225 BTB_4 236 329 2.6E-12
4 g17158.t1 SUPERFAMILY SSF52058 L domain-like 43 149 3.4E-19
5 g17158.t1 SUPERFAMILY SSF54695 POZ domain 228 327 1.92E-15

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed