General information for g17163.t8
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Cytochrome P450 9c1.
Parent gene
- The parent gene g17163 is located on chr_4: 12689302..12690335 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g17163 | g17163.t8 | isoform | g17163.t8 | 12689302 | 12690335 |
| chr_4 | g17163 | g17163.t8 | exon | g17163.t8.exon1 | 12689302 | 12690072 |
| chr_4 | g17163 | g17163.t8 | cds | g17163.t8.CDS1 | 12689304 | 12690072 |
| chr_4 | g17163 | g17163.t8 | exon | g17163.t8.exon2 | 12690124 | 12690335 |
| chr_4 | g17163 | g17163.t8 | cds | g17163.t8.CDS2 | 12690124 | 12690335 |
| chr_4 | g17163 | g17163.t8 | TSS | g17163.t8 | 12690401 | 12690401 |
| chr_4 | g17163 | g17163.t8 | TTS | g17163.t8 | NA | NA |
Sequences
>g17163.t8 Gene=g17163 Length=983
ATGGACACTTATTTATTAATCATTTGGGCTGTCATTTTTCTTGGATATTTCATTTACAAA
AAAGCAACAAAAAATTTAAAATTTTTTGAAAAGCATGGAATTCCATATGAAAAACCACTG
CCATTTTTCGGCAATTCATTAAAACTTTTAATGAAAAAGGAAAATATGATTGAATCTATT
GTGAATCCATATGAAAAATTCAAAAATAGTTTTGTTTATGGAGTTTTTGGAATGAACATT
CCCAATTTTGTTATCAGTGATCCAGAATTGATAAAACAAATAACAATTAAAGATTTTGAT
AGCTTTGTCAATCATGATAAGAGCTTTAATGAAGATGTCGATAAATTTTCAAGCAAAATG
TTGTTTACATTGGTAGACGAGAAATGGCGGCATATGAGGACAGTTTTAAGTCCAATTTTT
ACAAGTTCCAAAATGAAAATGATGTTTGGAATTTTATCAGAATGTGCAAATGAATTTGTT
GAACATCATGAAGAAAAAGCTAAGCATGGAAAAGTCATTGTAAATTGTGTTGAAACTTAT
CCACGTTACACTGTTGATGGAATTTCTACTGCTGTTCTTGGATTTAAAGGTGACTGCATT
AAAAATGAAGACAGCAAGCTCTATAAATTTGCAATGCGAATGAGAAAGCCAACATTTATA
ACAAACATAAAAATTATGATTTTTCTTATATCTCGTTGGTTTTATGTCAAACTTGGCTTA
CAAATGACATTGAAAGAAGTTTATGATTTTTTCTATAATGCAATCATTAAAGTCATGAAT
GAACGAGAAGAAAAAGGAATTTTTCGACCTGATGTTGTGCAATTGCTGCTTCAAGCAAGA
CAAGGACAATTGCAAAAAGAAAGTGACATCAATGAAAAAGAATTGTCAAACTTTTCTGCT
AATATTGAATATGATACTGGTGCTCAAAATAAGAAGATAACAAATTGGACCGATGAACAT
TATATGGCTCAGGGATTTTTATT
>g17163.t8 Gene=g17163 Length=327
MDTYLLIIWAVIFLGYFIYKKATKNLKFFEKHGIPYEKPLPFFGNSLKLLMKKENMIESI
VNPYEKFKNSFVYGVFGMNIPNFVISDPELIKQITIKDFDSFVNHDKSFNEDVDKFSSKM
LFTLVDEKWRHMRTVLSPIFTSSKMKMMFGILSECANEFVEHHEEKAKHGKVIVNCVETY
PRYTVDGISTAVLGFKGDCIKNEDSKLYKFAMRMRKPTFITNIKIMIFLISRWFYVKLGL
QMTLKEVYDFFYNAIIKVMNEREEKGIFRPDVVQLLLQARQGQLQKESDINEKELSNFSA
NIEYDTGAQNKKITNWTDEHYMAQGFL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g17163.t8 | Gene3D | G3DSA:1.10.630.10 | Cytochrome p450 | 17 | 302 | 1.5E-47 |
| 2 | g17163.t8 | PANTHER | PTHR24292 | CYTOCHROME P450 | 7 | 326 | 1.0E-62 |
| 4 | g17163.t8 | PRINTS | PR00464 | Group II E-class P450 signature | 126 | 146 | 2.2E-5 |
| 3 | g17163.t8 | PRINTS | PR00464 | Group II E-class P450 signature | 182 | 200 | 2.2E-5 |
| 1 | g17163.t8 | Pfam | PF00067 | Cytochrome P450 | 35 | 296 | 3.1E-20 |
| 11 | g17163.t8 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 5 | - |
| 13 | g17163.t8 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 6 | 22 | - |
| 9 | g17163.t8 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 23 | 218 | - |
| 12 | g17163.t8 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 219 | 236 | - |
| 10 | g17163.t8 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 237 | 327 | - |
| 7 | g17163.t8 | SUPERFAMILY | SSF48264 | Cytochrome P450 | 34 | 290 | 1.23E-36 |
| 6 | g17163.t8 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 5 | 19 | - |
| 5 | g17163.t8 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 219 | 236 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0020037 | heme binding | MF |
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | MF |
| GO:0005506 | iron ion binding | MF |
| GO:0004497 | monooxygenase activity | MF |
| GO:0055114 | NA | NA |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed