General information for g17169.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Lipase member H-A.
Parent gene
- The parent gene g17169 is located on chr_4: 12697001..12704509 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g17169 | g17169.t1 | TSS | g17169.t1 | 12696966 | 12696966 |
| chr_4 | g17169 | g17169.t1 | isoform | g17169.t1 | 12697001 | 12698547 |
| chr_4 | g17169 | g17169.t1 | exon | g17169.t1.exon1 | 12697001 | 12697063 |
| chr_4 | g17169 | g17169.t1 | cds | g17169.t1.CDS1 | 12697001 | 12697063 |
| chr_4 | g17169 | g17169.t1 | exon | g17169.t1.exon2 | 12697146 | 12697430 |
| chr_4 | g17169 | g17169.t1 | cds | g17169.t1.CDS2 | 12697146 | 12697430 |
| chr_4 | g17169 | g17169.t1 | exon | g17169.t1.exon3 | 12697528 | 12697702 |
| chr_4 | g17169 | g17169.t1 | cds | g17169.t1.CDS3 | 12697528 | 12697702 |
| chr_4 | g17169 | g17169.t1 | exon | g17169.t1.exon4 | 12697761 | 12697836 |
| chr_4 | g17169 | g17169.t1 | cds | g17169.t1.CDS4 | 12697761 | 12697836 |
| chr_4 | g17169 | g17169.t1 | exon | g17169.t1.exon5 | 12697907 | 12698040 |
| chr_4 | g17169 | g17169.t1 | cds | g17169.t1.CDS5 | 12697907 | 12698040 |
| chr_4 | g17169 | g17169.t1 | exon | g17169.t1.exon6 | 12698318 | 12698547 |
| chr_4 | g17169 | g17169.t1 | cds | g17169.t1.CDS6 | 12698318 | 12698547 |
| chr_4 | g17169 | g17169.t1 | TTS | g17169.t1 | 12698610 | 12698610 |
Sequences
>g17169.t1 Gene=g17169 Length=963
ATGAAATATTTAAAGATTTTAATATTTTTTAAATATTTAGTATTTTTTATTAAAGCGGCA
AAAGTCACCGATGGAGTTTTTTTCGTATTTTACGGTCCAACATATGATGACTATAAAATT
ACAACTTTAAATTTCAATTTTGCTACTCTTATCAATACAAAATATTATAATAGCAATAAA
CCAACAGTTTTTTATGTCCACGGATGGAGAAGTGGAATAAAAATGGTCGGTACAGAAGAC
ATTGTTCAAGCTTATTTATCAAGAGGTGATCACAATATTATTGCAGTTGATTGGAGCAAA
TATTCAAGTAATGTCGATTATATTGAAGTTGCTGCTTCTGTTAAAAATCAAGCAACTTTC
AACACAGCAGTTTTAAGGCAAATGCAAACAGCTGGATTTAATTTGTCGACTTTTCATTTT
GTCGGTCATAGTTTAGGTGCACAAATTTTGGGACGTGTTGGTTATCAATTTATCAATAAT
TATAGCTTCAAATTCAAAAGAATCACTGGACTTGATCCTGCTGGACCACTTTTTGCTAAC
AGAAATGTTGACAAACTCTTTCAACTCGAATATCCAACATTGAACAAATTAAATGCAGAA
TTTGTTGACATAATTCATACCGATGCTGGTACATTTGGATCAAAATATTCAACAGGTCAT
ATCGACTTTCGTCCAAATGGTGGAAGTTCACAGTATGGTTGCTCTTTATCTGATTGTCTT
CAAATTAATCAAGACGACTGTCTATCATGTGATCATGGTCGTGCATGGAAATATTATGCT
GAATCTGTTAACATCACAACATCGACTTTCATTGCCAAAAGATGTCCTGATAATGTCACA
GATTTCACTAAATCAAAATGTATTGGACCAGAAACAGCATCAATGGGTTTCAATGCTGAT
AAATATAAAGTTGGTGGAAATTATTACCTTGAAACTAATGATAGAAAACTTTACTCAAAA
TGA
>g17169.t1 Gene=g17169 Length=320
MKYLKILIFFKYLVFFIKAAKVTDGVFFVFYGPTYDDYKITTLNFNFATLINTKYYNSNK
PTVFYVHGWRSGIKMVGTEDIVQAYLSRGDHNIIAVDWSKYSSNVDYIEVAASVKNQATF
NTAVLRQMQTAGFNLSTFHFVGHSLGAQILGRVGYQFINNYSFKFKRITGLDPAGPLFAN
RNVDKLFQLEYPTLNKLNAEFVDIIHTDAGTFGSKYSTGHIDFRPNGGSSQYGCSLSDCL
QINQDDCLSCDHGRAWKYYAESVNITTSTFIAKRCPDNVTDFTKSKCIGPETASMGFNAD
KYKVGGNYYLETNDRKLYSK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g17169.t1 | Gene3D | G3DSA:3.40.50.1820 | - | 10 | 320 | 6.2E-77 |
| 2 | g17169.t1 | PANTHER | PTHR11610 | LIPASE | 43 | 318 | 7.6E-70 |
| 4 | g17169.t1 | PRINTS | PR00821 | Triacylglycerol lipase family signature | 50 | 69 | 1.0E-9 |
| 3 | g17169.t1 | PRINTS | PR00821 | Triacylglycerol lipase family signature | 137 | 155 | 1.0E-9 |
| 5 | g17169.t1 | PRINTS | PR00821 | Triacylglycerol lipase family signature | 250 | 265 | 1.0E-9 |
| 1 | g17169.t1 | Pfam | PF00151 | Lipase | 48 | 316 | 4.8E-46 |
| 9 | g17169.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 11 | - |
| 11 | g17169.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 12 | 31 | - |
| 10 | g17169.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 32 | 320 | - |
| 6 | g17169.t1 | SUPERFAMILY | SSF53474 | alpha/beta-Hydrolases | 9 | 316 | 3.52E-52 |
| 7 | g17169.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 19 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004806 | triglyceride lipase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed