General information for g17172.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Chymotrypsin BI.
Parent gene
- The parent gene g17172 is located on chr_4: 12708208..12709231 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g17172 | g17172.t3 | TSS | g17172.t3 | 12708180 | 12708180 |
| chr_4 | g17172 | g17172.t3 | isoform | g17172.t3 | 12708208 | 12709231 |
| chr_4 | g17172 | g17172.t3 | exon | g17172.t3.exon1 | 12708208 | 12708391 |
| chr_4 | g17172 | g17172.t3 | cds | g17172.t3.CDS1 | 12708350 | 12708391 |
| chr_4 | g17172 | g17172.t3 | exon | g17172.t3.exon2 | 12708447 | 12708528 |
| chr_4 | g17172 | g17172.t3 | cds | g17172.t3.CDS2 | 12708447 | 12708528 |
| chr_4 | g17172 | g17172.t3 | exon | g17172.t3.exon3 | 12708584 | 12709024 |
| chr_4 | g17172 | g17172.t3 | cds | g17172.t3.CDS3 | 12708584 | 12709024 |
| chr_4 | g17172 | g17172.t3 | exon | g17172.t3.exon4 | 12709080 | 12709231 |
| chr_4 | g17172 | g17172.t3 | cds | g17172.t3.CDS4 | 12709080 | 12709231 |
| chr_4 | g17172 | g17172.t3 | TTS | g17172.t3 | 12709311 | 12709311 |
Sequences
>g17172.t3 Gene=g17172 Length=859
ATGAAGTTCTTAATTCTTTTGGTCACAGTTGTTGGATTTGTAGCAGCAGAGCAAGTTGAT
TGGTCAAATGTTCGTCCAATTCATGAAGTCTTGCAAGACACATTAACTAGAAGTGCTGTT
ACAGCTGAAAGACGTATTGTCAATGGACAACCAGCTCAACCACATCAATTTCCATATCAA
GTTTGTTGCTTTGCTAATCAGCACATTGACAGGAACTTCACTCTGTGGTGGATCAGTTAT
CAGCACAAATGCCGTCCTTACAGCTGCTCATTGCACTGCTCCATTTGCTCAAAGTTATTT
GATTATTGCTGGTGCATATAATAGAGTACAAATCGAACCAAACCAACAACGCAGAACAGA
ACCAGCAAGCAACTTTATTCAACATCCTGAATATGGCAGTATTCGTTTGATCAATGATAT
TGCTGTCATTCGTGTCACTCAAGCTTTTACTTTTAATGAATTTGTACAGCCAGTTCAAAT
TGCCTCAAATCCAAATGAACTTCATGTTGGTGCAAGAGTTGATGTATCAGGATTTGGAAG
ATTCAGTGATAGCTTGCCAAATACATCAGAAGTTGTTCTATACACTACTAAGACTGTCAT
TACCAATGCTCAATGTTTGTCATTCTTCCCTGCCAATGTTATTGCAACAACAATTTGTGC
TGTTGGTGATCCAGAAATTAATAACTCAGTTTGTAATGGTGATTCAGGTGGTCCATTAAC
AATTCAACGCAATGAAGGTTCATACCAAGTTGGTGTTGTTTCATTTGGAAGTGCTCAAGG
ATGTGAAGCTGGCTTCCCAGATGGTTATGCCCGTGTTTCCCATTTCAATGAATGGATTCG
TACTACAGCTGGTTTCTAA
>g17172.t3 Gene=g17172 Length=238
MDNQLNHINFHIKFVALLISTLTGTSLCGGSVISTNAVLTAAHCTAPFAQSYLIIAGAYN
RVQIEPNQQRRTEPASNFIQHPEYGSIRLINDIAVIRVTQAFTFNEFVQPVQIASNPNEL
HVGARVDVSGFGRFSDSLPNTSEVVLYTTKTVITNAQCLSFFPANVIATTICAVGDPEIN
NSVCNGDSGGPLTIQRNEGSYQVGVVSFGSAQGCEAGFPDGYARVSHFNEWIRTTAGF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 11 | g17172.t3 | CDD | cd00190 | Tryp_SPc | 15 | 235 | 1.33306E-60 |
| 10 | g17172.t3 | Gene3D | G3DSA:2.40.10.10 | - | 19 | 232 | 1.7E-51 |
| 9 | g17172.t3 | Gene3D | G3DSA:2.40.10.10 | - | 111 | 226 | 1.7E-51 |
| 2 | g17172.t3 | PANTHER | PTHR24250:SF56 | SERINE PROTEASE P96 | 15 | 234 | 1.1E-70 |
| 3 | g17172.t3 | PANTHER | PTHR24250 | CHYMOTRYPSIN-RELATED | 15 | 234 | 1.1E-70 |
| 6 | g17172.t3 | PRINTS | PR00722 | Chymotrypsin serine protease family (S1) signature | 29 | 44 | 2.8E-11 |
| 4 | g17172.t3 | PRINTS | PR00722 | Chymotrypsin serine protease family (S1) signature | 88 | 102 | 2.8E-11 |
| 5 | g17172.t3 | PRINTS | PR00722 | Chymotrypsin serine protease family (S1) signature | 181 | 193 | 2.8E-11 |
| 1 | g17172.t3 | Pfam | PF00089 | Trypsin | 22 | 232 | 1.6E-46 |
| 12 | g17172.t3 | ProSitePatterns | PS00134 | Serine proteases, trypsin family, histidine active site. | 39 | 44 | - |
| 13 | g17172.t3 | ProSitePatterns | PS00135 | Serine proteases, trypsin family, serine active site. | 182 | 193 | - |
| 15 | g17172.t3 | ProSiteProfiles | PS50240 | Serine proteases, trypsin domain profile. | 15 | 237 | 23.39 |
| 14 | g17172.t3 | SMART | SM00020 | trypsin_2 | 4 | 232 | 4.5E-47 |
| 7 | g17172.t3 | SUPERFAMILY | SSF50494 | Trypsin-like serine proteases | 14 | 236 | 1.01E-57 |
| 8 | g17172.t3 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 28 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004252 | serine-type endopeptidase activity | MF |
| GO:0006508 | proteolysis | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed