General information for g17178.t8
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Trehalase.
Parent gene
- The parent gene g17178 is located on chr_4: 12745227..12745915 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g17178 | g17178.t8 | TTS | g17178.t8 | 12729498 | 12729498 |
| chr_4 | g17178 | g17178.t8 | isoform | g17178.t8 | 12729721 | 12731594 |
| chr_4 | g17178 | g17178.t8 | exon | g17178.t8.exon1 | 12729721 | 12730608 |
| chr_4 | g17178 | g17178.t8 | cds | g17178.t8.CDS1 | 12730453 | 12730608 |
| chr_4 | g17178 | g17178.t8 | exon | g17178.t8.exon2 | 12730787 | 12731185 |
| chr_4 | g17178 | g17178.t8 | cds | g17178.t8.CDS2 | 12730787 | 12731185 |
| chr_4 | g17178 | g17178.t8 | exon | g17178.t8.exon3 | 12731252 | 12731594 |
| chr_4 | g17178 | g17178.t8 | cds | g17178.t8.CDS3 | 12731252 | 12731455 |
| chr_4 | g17178 | g17178.t8 | TSS | g17178.t8 | NA | NA |
Sequences
>g17178.t8 Gene=g17178 Length=1630
ATTAGCAAGATATGGTGATAAATCAAATGGACCAAGACCAGAAAGTTATAGAGAAGATAT
AGAAACAGGAAGTGGTTTTCAAAGTGCAAAGGACAAAGAAGAACATTATGCAGAATTGAA
AGCAGCTGCTGAAAGTGGAATGGACTTTTCATCGCGATGGTTTATCAATGATGAAGGCAC
AAATGTTGGAACACTTGAGAATTTAAAGACAAGATATATCATACCAGTTGAATTAAATGC
TATTTTATATTGGAATGCCGTCATTATTGCTGAATTTTATGCTATTGCTGGCAATGAAAC
TAGAAAAAAAGAATACCTTAGAATAGCTAAGGACTTTATGGATGCTGTAAATGAAGTGTT
ATGGGATGAAGAAACTGGAGCATGGCTCGATTATGATCTGATAAATGAAAAACACAGAAA
TTATTTCGTTCCAACAAATCTTTCGCCACTTTGGATGAAATGCTATGATATAACAAAACG
CGAACACATTGCCTCAAAAGTCTTACAGTATATTGATAATTTAAAACTTGATGATTATCC
TGGTGGTGTTCCAACAACTCTCATGAACAGTGGTGAACAATGGGATTGGCCAAATGTATG
GGCACCAACGCAACATATTTTAATTGTTGGATTAGAAAATCTTGGTGTTAAAGAGGCTCA
AGAAAAAGCACAAGATTATGCACAACGATGGGTGCATGGCAATTATATTGCATTCAAAGA
GAGTGGAGCTATGTATGAAAAGTATCTTGCAACAGAACTCGGCGGACATGGTGGAGGTGG
TGAATATGAAGTCCAAAAAGGCTTCGGATGGACAAATGGTGTAATTCTTGATCTCCTTGA
TCGTTATGGCGAAGTTTTAAGTTCTTCAGGTGAAGAATCAAATTTGATAAAGGAATAAAA
AACTTTGCGAATCATTTTCATCACACAAAAAAAAATTTCGTGCACATTTGTCCTATAATT
ATACACTGACACCCACCACACCACCATTTCATCATCTTTGTTATTTGTTAATGTGAAGTC
AAAAAAAAAGAATTTCTTAGGTCGTTGAGATAAAATTTAGGAAATTTGTTGTATCTAAAA
ATAAAATCATTCATTCAATTTAAGTTTCTGAGTTAGTTTAGCTGGTGATAATTTTTTTTG
TTTAATTTCTCTCTCATTTATGACGTAAGCTTTAATGACACAAATTAAAATAGTATATAG
ATGAACTACCGCGATGAAAAAAAGTTATGAGTGATAATCAATTAATTGTGTCTTTGCACT
TCATATTAAATTTATTTCATAATGACGACAAATTTAAATAAAAATTCTAAAAAAATTATA
AAAAAAATCATTAGTGAAAAATTTTGTTTCATTTCAAACCTTTGGTTGTGGTTAAAACAA
ATTGAATTTTTTATGTTTCAAAGTTATCATTTCTAAAATTTTTATGGTTTCATGGAAATT
CATTTTTTGGGTAGGTTTACACGAATTTATTAAAATATTTTTAAAATTTTTTGATTTCAT
TTATAAAAATATTTCATAAAAAATAAAATTTTCTTTTTAACAAAAAATAGTTAAACCATC
AACATTAGGAAAATTATTTACTGGAATAATTGCAGTGTCATCAATAATGATTTCTAGAGT
TAGCTGGTGA
>g17178.t8 Gene=g17178 Length=252
MDFSSRWFINDEGTNVGTLENLKTRYIIPVELNAILYWNAVIIAEFYAIAGNETRKKEYL
RIAKDFMDAVNEVLWDEETGAWLDYDLINEKHRNYFVPTNLSPLWMKCYDITKREHIASK
VLQYIDNLKLDDYPGGVPTTLMNSGEQWDWPNVWAPTQHILIVGLENLGVKEAQEKAQDY
AQRWVHGNYIAFKESGAMYEKYLATELGGHGGGGEYEVQKGFGWTNGVILDLLDRYGEVL
SSSGEESNLIKE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g17178.t8 | Gene3D | G3DSA:1.50.10.10 | - | 1 | 249 | 4.1E-82 |
| 2 | g17178.t8 | PANTHER | PTHR23403 | TREHALASE | 1 | 238 | 8.3E-86 |
| 4 | g17178.t8 | PRINTS | PR00744 | Glycosyl hydrolase family 37 signature | 27 | 44 | 1.4E-20 |
| 3 | g17178.t8 | PRINTS | PR00744 | Glycosyl hydrolase family 37 signature | 70 | 86 | 1.4E-20 |
| 6 | g17178.t8 | PRINTS | PR00744 | Glycosyl hydrolase family 37 signature | 140 | 156 | 1.4E-20 |
| 5 | g17178.t8 | PRINTS | PR00744 | Glycosyl hydrolase family 37 signature | 220 | 233 | 1.4E-20 |
| 1 | g17178.t8 | Pfam | PF01204 | Trehalase | 1 | 237 | 1.2E-77 |
| 8 | g17178.t8 | ProSitePatterns | PS00928 | Trehalase signature 2. | 147 | 156 | - |
| 7 | g17178.t8 | SUPERFAMILY | SSF48208 | Six-hairpin glycosidases | 1 | 237 | 1.7E-72 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004555 | alpha,alpha-trehalase activity | MF |
| GO:0005975 | carbohydrate metabolic process | BP |
| GO:0005991 | trehalose metabolic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
