General information for g17198.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g17198 is located on chr_4: 12797472..12798922 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g17198 | g17198.t4 | TSS | g17198.t4 | 12797380 | 12797380 |
| chr_4 | g17198 | g17198.t4 | isoform | g17198.t4 | 12797472 | 12798922 |
| chr_4 | g17198 | g17198.t4 | exon | g17198.t4.exon1 | 12797472 | 12798627 |
| chr_4 | g17198 | g17198.t4 | cds | g17198.t4.CDS1 | 12797472 | 12798627 |
| chr_4 | g17198 | g17198.t4 | TTS | g17198.t4 | 12798100 | 12798100 |
| chr_4 | g17198 | g17198.t4 | exon | g17198.t4.exon2 | 12798710 | 12798922 |
| chr_4 | g17198 | g17198.t4 | cds | g17198.t4.CDS2 | 12798710 | 12798726 |
Sequences
>g17198.t4 Gene=g17198 Length=1369
ATGTCAGGAATTGAAATAAGGTGCACTCTTGAAAGTTACAATGCTGGAGTTAAATGTGTA
ATTTCAAATCAGAAGATTCTTAAGGGAAATATTGCTTTGGACGCAATAAATCATTGGATT
TATGAGTCATTGGATAAAAATAAAAACAAATTTAATTTTCTACATTTTGATAATTGCGAC
TTTGAAGAATTTCCTGAAAACTTTCAAGAATTATTTCCAAATGTGACAAAATTGGAAGTT
AATGGAGGAAATCTTCTAAGTATTGGTTATAAACACGTAGGGAAATGGAAAAATATGACA
AGCTTCAAAATCACTAATTGTGGACTCAAGTACATTTACAATTACATTTTCAAAGACATG
AAGCAGCTCCAAGAAATTTCATTTGCAAATAACAAACTTGAAGAAATTGGACCAAATATT
CTTGATGGATTTGAGTATATTGATTTAGTTGATTTTAGTGGTAATACGAAAATCAACAAA
TTTTTCAAAAGACAGCCAATGTATCAATACAATTATAGTCAATACCAATATTATGGACCA
TCGTTAAATTTATCCGATAATCAATTGTTAACTGATCTTAAAAATGAAATAAAAATAAAC
TGTTTTCCTCATTATGTTTCCCAATCAGAATATAATGAAATGTTAAATGATTTATCAATG
AAAAATACCAAGCTTGAAAAAGAAGTTTCAAGACTTACAGAGCTGCTGAATATTGTTTTG
GCAAATCCAAATTTCAAAAACTTCAAGGTCAATATTGGTAAAACATCTTTCAACATTCAC
AAAACAATTTTTGCATCTCGAAGTCCTGTTTTTGCTGAAATGTTAGAAAATAATCCAGAG
GCGACTGAATTGAACCTTGAAGACATCAGTGAAAAAACATTCAAAGTCGTTTATGATTTT
GCTTACAAAGAAAAACTTCCAACAGCCAATGAAGATAATCGGGAAATTTATGCAGCTGCA
AAACGATTAAAAATTGAAAAACTCGCTAAAGTTGCTGCTGAGTATTTGATGGCAAATGTC
ACTGTTGAAAATTCATTTGATTTACTTGTTTTGAGCAATAAATTTGATCATGAAGAATTG
AGAAAGAAAGCATTTGAAAATATTCAAACTAAAATCTTTCCTGAACGCAAATTAGATCAA
GAATTGGCAAAGCAACTCAATGACTGTCATTAAGTTGTAAAAATGACAAATTTTTTATCG
ATAAGAAAAACATAAGAATATAAAAAAATATTTTTTGTAATCATGAAAACAACAGAAATA
ATTTTTTTTCTTAATAAAACGGTGACAATGTTTTTTATTCTTTTAAAAATTTGCTTCATA
ACTTTAACTCTCAAAAGATGAACAAATTGATTTTGCAGTCTTAAATTTT
>g17198.t4 Gene=g17198 Length=390
MSGIEIRCTLESYNAGVKCVISNQKILKGNIALDAINHWIYESLDKNKNKFNFLHFDNCD
FEEFPENFQELFPNVTKLEVNGGNLLSIGYKHVGKWKNMTSFKITNCGLKYIYNYIFKDM
KQLQEISFANNKLEEIGPNILDGFEYIDLVDFSGNTKINKFFKRQPMYQYNYSQYQYYGP
SLNLSDNQLLTDLKNEIKINCFPHYVSQSEYNEMLNDLSMKNTKLEKEVSRLTELLNIVL
ANPNFKNFKVNIGKTSFNIHKTIFASRSPVFAEMLENNPEATELNLEDISEKTFKVVYDF
AYKEKLPTANEDNREIYAAAKRLKIEKLAKVAAEYLMANVTVENSFDLLVLSNKFDHEEL
RKKAFENIQTKIFPERKLDQELAKQLNDCH
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g17198.t4 | Coils | Coil | Coil | 208 | 242 | - |
| 7 | g17198.t4 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 26 | 180 | 9.8E-14 |
| 8 | g17198.t4 | Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 214 | 371 | 2.9E-27 |
| 2 | g17198.t4 | PANTHER | PTHR24413:SF213 | FI01029P-RELATED | 208 | 369 | 1.3E-17 |
| 3 | g17198.t4 | PANTHER | PTHR24413 | SPECKLE-TYPE POZ PROTEIN | 208 | 369 | 1.3E-17 |
| 1 | g17198.t4 | Pfam | PF00651 | BTB/POZ domain | 244 | 337 | 2.8E-14 |
| 10 | g17198.t4 | ProSiteProfiles | PS50097 | BTB domain profile. | 246 | 310 | 13.033 |
| 6 | g17198.t4 | SMART | SM00225 | BTB_4 | 246 | 340 | 4.4E-13 |
| 4 | g17198.t4 | SUPERFAMILY | SSF52058 | L domain-like | 52 | 193 | 2.93E-12 |
| 5 | g17198.t4 | SUPERFAMILY | SSF54695 | POZ domain | 229 | 339 | 7.85E-18 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
