Gene loci information

Transcript annotation

  • This transcript has been annotated as Glutathione S-transferase 1-1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g1720 g1720.t3 isoform g1720.t3 12739216 12745103
chr_3 g1720 g1720.t3 exon g1720.t3.exon1 12739216 12739224
chr_3 g1720 g1720.t3 exon g1720.t3.exon2 12744293 12745103
chr_3 g1720 g1720.t3 cds g1720.t3.CDS1 12744397 12744975
chr_3 g1720 g1720.t3 TSS g1720.t3 12745205 12745205
chr_3 g1720 g1720.t3 TTS g1720.t3 NA NA

Sequences

>g1720.t3 Gene=g1720 Length=820
ATGTCAAAAAGTGATAGACGCCCAGTGCTTTATTATACATTAGGTGAATTTTTCTAAAAA
AAAACAAAGTTTAAGCCAATTGAAATATTTTTTTGATTTCAGCTTCAGCTTCGTGTCGTT
CAGTCCTCATGACGGCAGAAGCATTGAAGCTTAAATTAAATTTAAAACCAATGGATTTAA
TGCAAAGAGAGCATTTACATCCGGGATTTTTAAAAATAAATCCTCATCATCAAGTACCAA
CTCTATCTGACAATGAATTTAATTTGTATGAGTCGAGAGCAATTTGCATCTATTTAGTCG
AGAAATATGGTAAAAATGATTCTCTGTATCCGAAGAACCCAAAATTGAGAGCAAAAATTA
ACCAATTGATCTATTTTGATCTCGGCACTTTGTACAAAAGTTTTTATGAGTATATCGTTC
CTGTATTTATGGGAGAAGAGTTGAGCGATGAAAAGTTAAAACCATTGCAAGAAGCTGTTC
AATTTTTAGATGGATTTTTGTCTGATAAAAAATTTGCAGTTGCTTACAAAATCACGATTG
CTGATTTAATTTTACTTGCTAGTGTTTCATCGATCGAAGCTTTTGACTTTGATTTCTCAT
CTTATCCAAATGTCACCAACTGGCTTGAAAATATGAAAGAGTGTGCTCCTGGCTATGATT
TAAATCAAGAGGGAATAGAAATGTTCAAATCATTCATGAAAAAGTAATGAGACAAGAAAA
AGCTTGTTAAATTGAGCAGAAAAAAAGTTGTCAATTTTTTACTAATGTTGAGAAAATTAT
TGTGAATAAAAAGACACAGATTTTAAATTTAAAAAAAAAA

>g1720.t3 Gene=g1720 Length=192
MTAEALKLKLNLKPMDLMQREHLHPGFLKINPHHQVPTLSDNEFNLYESRAICIYLVEKY
GKNDSLYPKNPKLRAKINQLIYFDLGTLYKSFYEYIVPVFMGEELSDEKLKPLQEAVQFL
DGFLSDKKFAVAYKITIADLILLASVSSIEAFDFDFSSYPNVTNWLENMKECAPGYDLNQ
EGIEMFKSFMKK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g1720.t3 CDD cd03177 GST_C_Delta_Epsilon 72 187 0.000
8 g1720.t3 Gene3D G3DSA:3.40.30.10 Glutaredoxin 1 65 0.000
7 g1720.t3 Gene3D G3DSA:1.20.1050.10 - 66 192 0.000
3 g1720.t3 PANTHER PTHR43969:SF9 GLUTATHIONE S TRANSFERASE D10, ISOFORM A-RELATED 1 191 0.000
4 g1720.t3 PANTHER PTHR43969 GLUTATHIONE S TRANSFERASE D10, ISOFORM A-RELATED 1 191 0.000
2 g1720.t3 Pfam PF02798 Glutathione S-transferase, N-terminal domain 3 57 0.000
1 g1720.t3 Pfam PF00043 Glutathione S-transferase, C-terminal domain 102 169 0.000
10 g1720.t3 ProSiteProfiles PS50404 Soluble glutathione S-transferase N-terminal domain profile. 1 64 18.114
9 g1720.t3 ProSiteProfiles PS50405 Soluble glutathione S-transferase C-terminal domain profile. 70 192 18.761
12 g1720.t3 SFLD SFLDG00358 Main (cytGST) 2 171 0.000
13 g1720.t3 SFLD SFLDS00019 Glutathione Transferase (cytosolic) 2 171 0.000
5 g1720.t3 SUPERFAMILY SSF52833 Thioredoxin-like 2 69 0.000
6 g1720.t3 SUPERFAMILY SSF47616 GST C-terminal domain-like 55 171 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006749 glutathione metabolic process BP
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed