General information for g17208.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as histone-arginine N-methyltransferase.
Parent gene
- The parent gene g17208 is located on chr_4: 12821096..12822226 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g17208 | g17208.t1 | TTS | g17208.t1 | 12821013 | 12821013 |
| chr_4 | g17208 | g17208.t1 | isoform | g17208.t1 | 12821096 | 12822226 |
| chr_4 | g17208 | g17208.t1 | exon | g17208.t1.exon1 | 12821096 | 12822088 |
| chr_4 | g17208 | g17208.t1 | cds | g17208.t1.CDS1 | 12821096 | 12822088 |
| chr_4 | g17208 | g17208.t1 | exon | g17208.t1.exon2 | 12822149 | 12822226 |
| chr_4 | g17208 | g17208.t1 | cds | g17208.t1.CDS2 | 12822149 | 12822226 |
| chr_4 | g17208 | g17208.t1 | TSS | g17208.t1 | 12822275 | 12822275 |
Sequences
>g17208.t1 Gene=g17208 Length=1071
ATGGAAATTAAAAGTATTTTAAAAATATTATTAATTCTAATTCTTTCACCATTACTTTGT
CATTCAAGTGAGATTGAATTACCGAGTAAATATGTAGAAAGAGCAGCACAAGGGCATACA
AATAATTGGGCTGTACTTGTAGACACTAGTCGATTTTGGTTTAATTATAGACATGTAGCA
AATGTGTTGTCAATTTATCGATCAGTGAAGCGTTTGGGTATTCCAGATTCTCAAATTATT
TTAATGGTAGCAGAAGATATGGCTTGTAATCCAAGAAATCCCCGACCTGCAACTGTTTTT
AACAACATGAATCAACAAATCAATGTTTATGGAAATGATGTTGAAGTAGATTACCGTGGT
TATGAAGTGACTGTTGAAAACTTTGTAAGACTACTGACTGGAAGAAATCATAATGGTACA
GCACGATCAAAGAAATTACTGACTGATTCAGGTTCAAATGTTCTTATTTATTTGACTGGT
CATGGCGGTGAAGGATTTTTAAAATTTCAAGATAGTGAAGAAATAACAAGTCAAGAACTT
GCTGATGCAATTGAACAAATGTGGCAGAAACAGCGATACCATGAACTTTTCTTTATGATT
GACACATGTCAAGCTGCTTCAATGTATGAAAAATTTTATTCACCCAACATTCTTGCAGTC
GCGAGTTCACTTGTTGGTGAGGATTCACTTTCACATCATGTTGATCCAGCTATTGGTGTC
TATATTATTGACCGATATACTTATTATGCTCTTGAATTTCTTGAGAAAGTTGAACCAAAT
AGTAAAAAGACAATGGCAGAATTTCTCTCTGTTTGTCCTAAAAGAGTTTGCATTTCAACG
GTTGGCGTGAGAAGAGACCTTTATCCAAAAGATCCAAGTTCAGTGCCAATTACTAATTTT
TTTGGTTCAGTACGGCCTATTGAAATGACAAATCAAGTAGTCAATATATCAATGTCATCA
ATTCCTGATGAGAAGGAAAGTGAAATAGTTGAAAAAATAGCAAAAGGAGTCACTTATAGT
GATCTTAAAATTAAATTCCCAGAACAATTTCCATCAAATATTTTTAAGTAA
>g17208.t1 Gene=g17208 Length=356
MEIKSILKILLILILSPLLCHSSEIELPSKYVERAAQGHTNNWAVLVDTSRFWFNYRHVA
NVLSIYRSVKRLGIPDSQIILMVAEDMACNPRNPRPATVFNNMNQQINVYGNDVEVDYRG
YEVTVENFVRLLTGRNHNGTARSKKLLTDSGSNVLIYLTGHGGEGFLKFQDSEEITSQEL
ADAIEQMWQKQRYHELFFMIDTCQAASMYEKFYSPNILAVASSLVGEDSLSHHVDPAIGV
YIIDRYTYYALEFLEKVEPNSKKTMAEFLSVCPKRVCISTVGVRRDLYPKDPSSVPITNF
FGSVRPIEMTNQVVNISMSSIPDEKESEIVEKIAKGVTYSDLKIKFPEQFPSNIFK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g17208.t1 | Gene3D | G3DSA:3.40.50.1460 | - | 37 | 322 | 1.4E-86 |
| 2 | g17208.t1 | PANTHER | PTHR48067 | GPI-ANCHOR TRANSAMIDASE | 10 | 314 | 4.2E-137 |
| 15 | g17208.t1 | PIRSF | PIRSF500138 | GPI8 | 1 | 356 | 4.3E-156 |
| 16 | g17208.t1 | PIRSF | PIRSF019663 | Legumain | 3 | 265 | 7.9E-43 |
| 5 | g17208.t1 | PRINTS | PR00776 | Hemoglobinase (C13) cysteine protease signature | 43 | 67 | 3.9E-36 |
| 7 | g17208.t1 | PRINTS | PR00776 | Hemoglobinase (C13) cysteine protease signature | 68 | 97 | 3.9E-36 |
| 6 | g17208.t1 | PRINTS | PR00776 | Hemoglobinase (C13) cysteine protease signature | 117 | 132 | 3.9E-36 |
| 4 | g17208.t1 | PRINTS | PR00776 | Hemoglobinase (C13) cysteine protease signature | 144 | 163 | 3.9E-36 |
| 3 | g17208.t1 | PRINTS | PR00776 | Hemoglobinase (C13) cysteine protease signature | 193 | 209 | 3.9E-36 |
| 1 | g17208.t1 | Pfam | PF01650 | Peptidase C13 family | 42 | 268 | 6.1E-47 |
| 11 | g17208.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 22 | - |
| 12 | g17208.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 8 | - |
| 13 | g17208.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 9 | 18 | - |
| 14 | g17208.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 19 | 22 | - |
| 10 | g17208.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 23 | 356 | - |
| 8 | g17208.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 22 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0042765 | GPI-anchor transamidase complex | CC |
| GO:0008233 | peptidase activity | MF |
| GO:0006508 | proteolysis | BP |
| GO:0003923 | GPI-anchor transamidase activity | MF |
| GO:0016255 | attachment of GPI anchor to protein | BP |
KEGG
Orthology
- This transcript has been annotated with K05290 (GPI-anchor transamidase subunit K)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
