Gene loci information

Transcript annotation

  • This transcript has been annotated as histone-arginine N-methyltransferase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g17208 g17208.t14 isoform g17208.t14 12819865 12821096
chr_4 g17208 g17208.t14 exon g17208.t14.exon1 12819865 12820264
chr_4 g17208 g17208.t14 exon g17208.t14.exon2 12820329 12821096
chr_4 g17208 g17208.t14 cds g17208.t14.CDS1 12820577 12820906
chr_4 g17208 g17208.t14 TSS g17208.t14 NA NA
chr_4 g17208 g17208.t14 TTS g17208.t14 NA NA

Sequences

>g17208.t14 Gene=g17208 Length=1168
AATTTTAAAAAAAAACCAAAGATTTTTCTTCATCCAATTTATTTTAACTTGAGATCACAA
TAAATAAATAAAAAAAATCATTTAATTTTACTGCATTTGTGCTTCATTTGATTCCCGCCA
TGTTCGATTAATCATTTCAACTATTTGTCCATAAGTTCTTGATTTAGTGAAATAATAAAC
AGCACAAACAATGATGAAAATCCAAGAAATCCATAAAAATATATCAACACGTTCTTCAAG
CATTGTCACTTTAAGTGGACTAGTTGGACTGAAATCTTCAGAAGTTACAACAACATTGCT
TGTATTTGGTTTTAAATTTGTATGCGATGAAATAAAATTGATGAAATTTGTTACTGTTGC
TGGTTGTGAAATGTTAAATTTATGCAGCATTCGACCATTATGGAATAAAACAATTGTTGG
CAATCCAATAATACCAAAATCAGTATTCAAGCCAGGATGTTCAAGTGCATCAAGTGCAGC
AACTTTTATATCTGGAAAATTCCTTGCCAATGCATTATAATGCGGAATTAAAGCTTGACA
ACCAGCACAGAATTTTGTATAAAAAAGTATAACTGCACAATTGCCAGGAAGTTGATCATT
GCGTAAATTGCCGGATATTGGTGTTAAAAGTGTCATAACTTCATTGAGACTGTTCATTAA
ATAGAGTGTGCCATTGCCTTTAGCTCTTATACATTTTGCACGTCTATCACGACGATCTTG
TTCATAAACTTCATGTAAATTACATTGATGAGTATCAAGATAAGTTATCTAAATATTTTG
AAGTTTCATTTCCAACATTTGCTTTTTCAATTTTTTCTCTTTTTTTAATGTCCATAAAAT
CACCCGTAAAAACTTGATAAAGAAATTGAAATTGTTTTAATGTAAATCCTTTAAATTCAT
GACACTTTACGACAAAAAATAAACTAAAAATCAAACAAATTCCTAAATATTTCATTGCTT
TTTTCTAAAAGTTTCTTTGACGATGTAAAAATGAAAATTTATTTTTAAATATTGGAAAAA
AAACGTAAACAAATGTTTGGTTGTATTTGTGAGTGTCGAAAACATGTGAAAATCTTGTTT
TTCAAATGCTGTCAGTTTTAACGTTAAAAAAATTAACAAATTTTTATTAAAAATATTTTT
AATTTCAATTAAATTTGTTAAATTTACA

>g17208.t14 Gene=g17208 Length=109
MMKIQEIHKNISTRSSSIVTLSGLVGLKSSEVTTTLLVFGFKFVCDEIKLMKFVTVAGCE
MLNLCSIRPLWNKTIVGNPIIPKSVFKPGCSSASSAATFISGKFLANAL

Protein features from InterProScan

No InterPro annotations for this transcript.

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed