General information for g17208.t16
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as histone-arginine N-methyltransferase.
Parent gene
- The parent gene g17208 is located on chr_4: 12821096..12822226 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g17208 | g17208.t16 | isoform | g17208.t16 | 12819865 | 12821096 |
| chr_4 | g17208 | g17208.t16 | exon | g17208.t16.exon1 | 12819865 | 12820259 |
| chr_4 | g17208 | g17208.t16 | exon | g17208.t16.exon2 | 12820318 | 12821096 |
| chr_4 | g17208 | g17208.t16 | cds | g17208.t16.CDS1 | 12820577 | 12820906 |
| chr_4 | g17208 | g17208.t16 | TSS | g17208.t16 | NA | NA |
| chr_4 | g17208 | g17208.t16 | TTS | g17208.t16 | NA | NA |
Sequences
>g17208.t16 Gene=g17208 Length=1174
AATTTTAAAAAAAAACCAAAGATTTTTCTTCATCCAATTTATTTTAACTTGAGATCACAA
TAAATAAATAAAAAAAATCATTTAATTTTACTGCATTTGTGCTTCATTTGATTCCCGCCA
TGTTCGATTAATCATTTCAACTATTTGTCCATAAGTTCTTGATTTAGTGAAATAATAAAC
AGCACAAACAATGATGAAAATCCAAGAAATCCATAAAAATATATCAACACGTTCTTCAAG
CATTGTCACTTTAAGTGGACTAGTTGGACTGAAATCTTCAGAAGTTACAACAACATTGCT
TGTATTTGGTTTTAAATTTGTATGCGATGAAATAAAATTGATGAAATTTGTTACTGTTGC
TGGTTGTGAAATGTTAAATTTATGCAGCATTCGACCATTATGGAATAAAACAATTGTTGG
CAATCCAATAATACCAAAATCAGTATTCAAGCCAGGATGTTCAAGTGCATCAAGTGCAGC
AACTTTTATATCTGGAAAATTCCTTGCCAATGCATTATAATGCGGAATTAAAGCTTGACA
ACCAGCACAGAATTTTGTATAAAAAAGTATAACTGCACAATTGCCAGGAAGTTGATCATT
GCGTAAATTGCCGGATATTGGTGTTAAAAGTGTCATAACTTCATTGAGACTGTTCATTAA
ATAGAGTGTGCCATTGCCTTTAGCTCTTATACATTTTGCACGTCTATCACGACGATCTTG
TTCATAAACTTCATGTAAATTACATTGATGAGTATCAAGATAAGTTATGTAGTCTAAAAT
ATTTTGAAGTTTCATTTCCAACATTTGCTTTTTCAATTTTTTCTCTTTTTTTAATGTCCA
TAAAATCACCCGTAAAAACTTGATAAAGAAATTGAAATTGTTTTAATGTAAATCCTTTAA
ATTCATGACACTTTACGACAAAAAATAAACTAAAAATCAAACAAATTCCTAAATATTTCA
TTGCTTTTTTCTAAAAGTTTCTTTGACGATGTAAAAATGAAAATTTATTTTTAAATATTG
GAAAAAAAACGTAAACAAATGTTTGGTTGTATTTGTGAGTGTCGAAAACATGTGAAAATC
TTGTTTTTCAAATGCTGTCAGTTTTAACGTTAAAAAAATTAACAAATTTTTATTAAAAAT
ATTTTTAATTTCAATTAAATTTGTTAAATTTACA
>g17208.t16 Gene=g17208 Length=109
MMKIQEIHKNISTRSSSIVTLSGLVGLKSSEVTTTLLVFGFKFVCDEIKLMKFVTVAGCE
MLNLCSIRPLWNKTIVGNPIIPKSVFKPGCSSASSAATFISGKFLANAL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g17208.t16 | Coils | Coil | Coil | 106 | 109 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed