General information for g17208.t20
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as histone-arginine N-methyltransferase.
Parent gene
- The parent gene g17208 is located on chr_4: 12821096..12822226 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g17208 | g17208.t20 | TTS | g17208.t20 | 12821013 | 12821013 |
| chr_4 | g17208 | g17208.t20 | isoform | g17208.t20 | 12821096 | 12822226 |
| chr_4 | g17208 | g17208.t20 | exon | g17208.t20.exon1 | 12821096 | 12822118 |
| chr_4 | g17208 | g17208.t20 | cds | g17208.t20.CDS1 | 12821096 | 12821923 |
| chr_4 | g17208 | g17208.t20 | exon | g17208.t20.exon2 | 12822214 | 12822226 |
| chr_4 | g17208 | g17208.t20 | TSS | g17208.t20 | 12822275 | 12822275 |
Sequences
>g17208.t20 Gene=g17208 Length=1036
ATGGAAATTAAAATATTTCTCTAAAAATTTATTAATCTTTCAGTTACCGAGTAAATATGT
AGAAAGAGCAGCACAAGGGCATACAAATAATTGGGCTGTACTTGTAGACACTAGTCGATT
TTGGTTTAATTATAGACATGTAGCAAATGTGTTGTCAATTTATCGATCAGTGAAGCGTTT
GGGTATTCCAGATTCTCAAATTATTTTAATGGTAGCAGAAGATATGGCTTGTAATCCAAG
AAATCCCCGACCTGCAACTGTTTTTAACAACATGAATCAACAAATCAATGTTTATGGAAA
TGATGTTGAAGTAGATTACCGTGGTTATGAAGTGACTGTTGAAAACTTTGTAAGACTACT
GACTGGAAGAAATCATAATGGTACAGCACGATCAAAGAAATTACTGACTGATTCAGGTTC
AAATGTTCTTATTTATTTGACTGGTCATGGCGGTGAAGGATTTTTAAAATTTCAAGATAG
TGAAGAAATAACAAGTCAAGAACTTGCTGATGCAATTGAACAAATGTGGCAGAAACAGCG
ATACCATGAACTTTTCTTTATGATTGACACATGTCAAGCTGCTTCAATGTATGAAAAATT
TTATTCACCCAACATTCTTGCAGTCGCGAGTTCACTTGTTGGTGAGGATTCACTTTCACA
TCATGTTGATCCAGCTATTGGTGTCTATATTATTGACCGATATACTTATTATGCTCTTGA
ATTTCTTGAGAAAGTTGAACCAAATAGTAAAAAGACAATGGCAGAATTTCTCTCTGTTTG
TCCTAAAAGAGTTTGCATTTCAACGGTTGGCGTGAGAAGAGACCTTTATCCAAAAGATCC
AAGTTCAGTGCCAATTACTAATTTTTTTGGTTCAGTACGGCCTATTGAAATGACAAATCA
AGTAGTCAATATATCAATGTCATCAATTCCTGATGAGAAGGAAAGTGAAATAGTTGAAAA
AATAGCAAAAGGAGTCACTTATAGTGATCTTAAAATTAAATTCCCAGAACAATTTCCATC
AAATATTTTTAAGTAA
>g17208.t20 Gene=g17208 Length=275
MVAEDMACNPRNPRPATVFNNMNQQINVYGNDVEVDYRGYEVTVENFVRLLTGRNHNGTA
RSKKLLTDSGSNVLIYLTGHGGEGFLKFQDSEEITSQELADAIEQMWQKQRYHELFFMID
TCQAASMYEKFYSPNILAVASSLVGEDSLSHHVDPAIGVYIIDRYTYYALEFLEKVEPNS
KKTMAEFLSVCPKRVCISTVGVRRDLYPKDPSSVPITNFFGSVRPIEMTNQVVNISMSSI
PDEKESEIVEKIAKGVTYSDLKIKFPEQFPSNIFK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g17208.t20 | Gene3D | G3DSA:3.40.50.1460 | - | 1 | 241 | 0 |
| 2 | g17208.t20 | PANTHER | PTHR48067 | GPI-ANCHOR TRANSAMIDASE | 1 | 233 | 0 |
| 5 | g17208.t20 | PRINTS | PR00776 | Hemoglobinase (C13) cysteine protease signature | 36 | 51 | 0 |
| 4 | g17208.t20 | PRINTS | PR00776 | Hemoglobinase (C13) cysteine protease signature | 63 | 82 | 0 |
| 3 | g17208.t20 | PRINTS | PR00776 | Hemoglobinase (C13) cysteine protease signature | 112 | 128 | 0 |
| 1 | g17208.t20 | Pfam | PF01650 | Peptidase C13 family | 1 | 187 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0042765 | GPI-anchor transamidase complex | CC |
| GO:0008233 | peptidase activity | MF |
| GO:0006508 | proteolysis | BP |
| GO:0003923 | GPI-anchor transamidase activity | MF |
| GO:0016255 | attachment of GPI anchor to protein | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
